Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2454 |
Symbol | |
ID | 8133400 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2816616 |
End bp | 2817803 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865736 |
Product | putative inner membrane protein |
Protein accession | YP_003018021 |
Protein GI | 253688831 |
COG category | [R] General function prediction only |
COG ID | [COG0628] Predicted permease |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.272244 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATGACGG GTGACCATAG GTTGTCACCC AAGCTACCTC GCCTTCAGCC TTTTCTTTTG CTATTGAGGA ATGATTCGTT GAGCAAATAT TCTCAGCCAC CACGATTTGA TCTGGCCAGA ATCCTGTTCA GTCTGGCGTT TATTACCATC ATGATTATTG CCTGCTTTTG GGTGGTACAG CCTTTTATTC TGGGATTTGC CTGGGCGTGT ATGGTGGTCA TTGCCACCTG GCCGATGCTG ATTAAATTTC AGGCGTTATT GTGGGGTCGG CGTTCTCTGG CCGTCATCGT TATGACGCTG CTGCTCATTC TGCTGTTTAT TGTCCCCATT GGCGTGCTTG TCAGTAGCGT GGTGGATAAC AGCTCGGCGT TAATGAGTTG GGGAGCCCGG CAGGAAAACT TTTCGCCGCC CACGCTGGAA TGGCTAACGT CAATTCCTTT AGTTGGAGAG AAATTGTTCA ACAGCTGGCA GGCGCTGTTA CAAAGCGGCG GCAGCGGCCT ATTTGCCAAA GTGCAGCCCT ATTTTGGTAA AACCGCAACC TGGCTGGTTG CACAGGCCGC CCATGTCGGG CGTTTTCTGA TGCACTGCTC TCTGATGCTG ATCTTCAGCG CCCTGCTGTA TTACAAGGGA GAAGCCGTTG CGAAAGCCGT GCGGCATTTC GCTATCCGGC TGGGACAGGA GCGCGGCGAT GCCGCCGTGA TTCTGGCGGC GCAGTCAATT CGTGCCGTTG CGCTGGGCGT AGTGGTAACG GCCATCGTGC AATCGGTGTT AGGCGGAATC GGTCTGGGAC TGTCCGGGAT TCCCTATACC ACACTATTAA CCGTACTGAT GTTTCTGTGC TGTCTGGCGC AGTTGGGGCC GTTGCCGGTA CTCATTCCTG CCATTATCTG GCTGTATTGG ACGGGTGATA ACACCTGGGG CACCATCCTG CTGGTCTGGA GTTGCGTCGT TGGAACAATC GATAACATTA TCCGCCCGGT ATTAATCAGG ATGGGTGCCG ATCTTCCTAT GCTGCTGATT CTTTCCGGCG TCATTGGCGG ATTGCTGGCT TTTGGCATGA TTGGCTTATT TATTGGTCCG GTCGTCCTCG CCGTTTCCTA TCGCCTGCTC TTTGCCTGGA TGCGTGAAAT CCCCGAACCG CAAAACATCC TCTCCGTTAA TACGTCCAGC AAACCCAACA AAGAATAA
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Protein sequence | MMTGDHRLSP KLPRLQPFLL LLRNDSLSKY SQPPRFDLAR ILFSLAFITI MIIACFWVVQ PFILGFAWAC MVVIATWPML IKFQALLWGR RSLAVIVMTL LLILLFIVPI GVLVSSVVDN SSALMSWGAR QENFSPPTLE WLTSIPLVGE KLFNSWQALL QSGGSGLFAK VQPYFGKTAT WLVAQAAHVG RFLMHCSLML IFSALLYYKG EAVAKAVRHF AIRLGQERGD AAVILAAQSI RAVALGVVVT AIVQSVLGGI GLGLSGIPYT TLLTVLMFLC CLAQLGPLPV LIPAIIWLYW TGDNTWGTIL LVWSCVVGTI DNIIRPVLIR MGADLPMLLI LSGVIGGLLA FGMIGLFIGP VVLAVSYRLL FAWMREIPEP QNILSVNTSS KPNKE
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