Gene PC1_2235 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2235 
Symbol 
ID8133179 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2568000 
End bp2569094 
Gene Length1095 bp 
Protein Length364 aa 
Translation table11 
GC content57% 
IMG OID644865522 
Productspermidine/putrescine ABC transporter ATPase subunit 
Protein accessionYP_003017809 
Protein GI253688619 
COG category[E] Amino acid transport and metabolism 
COG ID[COG3842] ABC-type spermidine/putrescine transport systems, ATPase components 
TIGRFAM ID[TIGR01187] spermidine/putrescine ABC transporter ATP-binding subunit 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAGAAATT ATGTCAGCTT CAGGAATGTT CAGAAGACCT ATGACGGCGA CCGTCTGATC 
GTCAAAAACC TCAATCTGGA TATCCGTGAA GGTGAATTTC TGACCCTGCT TGGGCCATCC 
GGCTCGGGAA AAACCACCAG TTTGATGATG CTCGCCGGGT TTGAAACCCC GACGCAGGGC 
GAAATTCTGC TGCGCGATGC GCCGCTGCAC CATCTTCCAC CACATCAGCG TGACATCGGT 
ATGGTATTTC AGAACTACGC CCTGTTCCCA CATATGACCG TGGCAGAGAA TCTCGCCTTT 
CCATTGTCCA TCCGTCGCCT GAACCGCGCC GACATCAAAG AGAAAGTGGA TCGAGTTCTG 
GATCGCGTGA AACTCACCAG CCTGGCCGAC CGCTACCCCG CGCAGATGTC CGGCGGCCAA 
CAGCAGCGTG TGGCGCTAGC CCGCGCGTTG GTTTTCGAGC CTAAACTGGT GCTGATGGAT 
GAACCGCTGG GCGCGCTGGA TAAACAGCTG CGCGAGCATA TGCAGTTGGA AATCAAGGAG 
CTGCATCAGT CGCTGGAGTT AACCGTGGTG TACGTCACCC ATGACCAGAG CGAAGCGATG 
ACGATGTCCA ACCGCGTCGC CGTGTTTAAC GATGGCGTGA TTCAGCAGAT GGATAGCCCC 
AGCGATATCT ACGAAAAACC GGAAAACGCC TTTGTGGCAC AGTTTATCGG CGAAAATAAT 
ACGCTGCTCG CCACACGCGC CGAGGCCGAA GGCGCATTCT ACCGGGCAAC ACTGGACGAC 
GGCACTTCAC TGCGTGCGCT GAAAGTCCGC CCCAGTTCGC CGGGTCGAAA AATTACGCTT 
TGCATCCGCC CGGAACGCGT TCACGTCAAC GCGCCCCACG TCGACGACAG CATGCAGCAG 
GTCAAAGCCC GCATTCAGCA GTTCATCTAT CTGGGCGATC ACGTCCGGAT GATGACGGAA 
GTGGCTGGCC AACCGCAATT CATGGTGAAA CTCCCTGCCA GCGAGATTCA GCCGCACTGG 
AAAGCCGGCA CCGAAGTCAA CTTGTCATGG CGGCCAGAGC ACCTGCGCGC GCTGGATAGC 
ATCATCACGC ATTAA
 
Protein sequence
MRNYVSFRNV QKTYDGDRLI VKNLNLDIRE GEFLTLLGPS GSGKTTSLMM LAGFETPTQG 
EILLRDAPLH HLPPHQRDIG MVFQNYALFP HMTVAENLAF PLSIRRLNRA DIKEKVDRVL 
DRVKLTSLAD RYPAQMSGGQ QQRVALARAL VFEPKLVLMD EPLGALDKQL REHMQLEIKE 
LHQSLELTVV YVTHDQSEAM TMSNRVAVFN DGVIQQMDSP SDIYEKPENA FVAQFIGENN 
TLLATRAEAE GAFYRATLDD GTSLRALKVR PSSPGRKITL CIRPERVHVN APHVDDSMQQ 
VKARIQQFIY LGDHVRMMTE VAGQPQFMVK LPASEIQPHW KAGTEVNLSW RPEHLRALDS 
IITH