Gene PC1_2114 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_2114 
SymbolprfA 
ID8133058 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand- 
Start bp2418345 
End bp2419427 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content55% 
IMG OID644865403 
Productpeptide chain release factor 1 
Protein accessionYP_003017690 
Protein GI253688500 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0216] Protein chain release factor A 
TIGRFAM ID[TIGR00019] peptide chain release factor 1 


Plasmid Coverage information

Num covering plasmid clones6 
Plasmid unclonability p-value0.234173 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCCTT CTATTGTTGC TAAACTGGAA GCGTTACAAG AACGCCATGA AGAAGTCCAG 
GCGTTACTCG GTGAGCCCAG CGTCATCGCT GATATGGACC GTTTTCGCGC GTTGTCGCGA 
GAATATGCTC AGCTCACTGA TATTACTCGC TGTTTCCAGC AATGGCAGCA GGCGCAAGAG 
GATCAGCAGA CCGCAGAAAT GATGCTGGAC GATCCTGAAA TGCGCGATAT GGCGCAGGAA 
GAATTGAAAG AGGGTAAAGC GACGATTGAA GCGTTGGAGC AACAACTTCA GGTGCTGCTG 
TTGCCGAAAG ATCCCGACGA TGAGCGCGGC TGTTTTCTGG AAGTGCGCGC CGGAACGGGC 
GGCGACGAAG CCGCGATTTT TGCCGGCGAC CTGTTTCGCA TGTACAGCCG TTATGCCGAG 
TCTCGCCGCT GGCGTGTTGA GGTGATGAGC GCCAGCGATG GCGAACATGG TGGTTATAAA 
GAAGTTATCG CTAAAATCTC CGGCGACGGC GTGTACGGCC AGCTTAAATT TGAATCCGGC 
GGCCATCGCG TGCAGCGCGT TCCTGCCACA GAATCTCAAG GGCGTATTCA TACCTCAGCC 
TGTACGGTCG CCGTGATGGC GGAAGTGCCG GAAGCGGAAC TGCCGGACAT CAACCCTGCG 
GATTTGCGTA TCGATACCTT CCGTTCTTCT GGCGCGGGCG GTCAGCACGT TAACACCACC 
GATTCGGCCA TTCGTATTAC TCACTTGCCA ACGGGTATTG TCGTGGAATG CCAAGACGAA 
CGTTCACAGC ACAAGAACAA AGCCAAAGCG CTGTCGGTGT TGGGCGCGCG TATTCGTGCC 
GCAGAAGTGC AGAAACGTCA GCAGGAAGAA GCGTCAACCC GCCGTAACCT GCTCGGTAGT 
GGCGATCGTT CTGACCGCAT CCGCACCTAC AACTTCCCAC AGGGAAGGGT GACCGATCAC 
CGAATTAACC TGACGTTATA CCGCCTGGAC GAAGTCATGG AAGGAAAATT GGATACGTTG 
ATTCAGCCAG TCGTGCAGGA ATACCAGGCC GATCAGCTTG CCGCGCTGTC CGAGCAGGAA 
TAA
 
Protein sequence
MKPSIVAKLE ALQERHEEVQ ALLGEPSVIA DMDRFRALSR EYAQLTDITR CFQQWQQAQE 
DQQTAEMMLD DPEMRDMAQE ELKEGKATIE ALEQQLQVLL LPKDPDDERG CFLEVRAGTG 
GDEAAIFAGD LFRMYSRYAE SRRWRVEVMS ASDGEHGGYK EVIAKISGDG VYGQLKFESG 
GHRVQRVPAT ESQGRIHTSA CTVAVMAEVP EAELPDINPA DLRIDTFRSS GAGGQHVNTT 
DSAIRITHLP TGIVVECQDE RSQHKNKAKA LSVLGARIRA AEVQKRQQEE ASTRRNLLGS 
GDRSDRIRTY NFPQGRVTDH RINLTLYRLD EVMEGKLDTL IQPVVQEYQA DQLAALSEQE