| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_2106 |
|---|
| Symbol | |
|---|
| ID | 8133050 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 2409693 |
|---|
| End bp | 2410643 |
|---|
| Gene Length | 951 bp |
|---|
| Protein Length | 316 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644865395 |
|---|
| Product | universal stress protein UspE |
|---|
| Protein accession | YP_003017682 |
|---|
| Protein GI | 253688492 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0589] Universal stress protein UspA and related nucleotide-binding proteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 5 |
|---|
| Plasmid unclonability p-value | 0.107549 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAGT ATCAGAACTT ACTGGTAGCT ATTGACCCAA ATCAGGATGA CCAACCAGCG
CTGCGTCGGG CGGTTTACCT GGTTCAGCGA CTTGGCGGCC GCATCAAGGC ATTTCTGCCG
ATTTATGATT TCTCTTATGA AATGACAACC CTGCTTTCTC CCGATGAAAG GGTGGAAATG
CGTCAGGGCG TTATCCAGCA GCGGACAGAG TGGATTGCCG AACAGTGCAA ATACTACATT
GAAGCGGGCG TTCCCATCGA AATCAAAGTG GTATGGCACA ATAAGCCCTT TGAAGCCATC
ATTCGGGAAG TAATTTCCGG CCAGCACGAC CTGTTGTTGA AAATGGCGCA TCAGCACGAT
CGGCTGGAAG CCGTCATCTT TACGCCAACC GACTGGCAAT TGCTGCGCAA ATGCCCTTGC
CCTGTGTGGA TGGTAAAAGA TCAACCCTGG CCAACCGAAG GTCGAGCGTT GGTTGCCGTC
AATTTGGCTA GCGAAGACCC TTATCACGAT CCGCTCAATA TTAAACTGGT ATCGGAAACG
CTGGAGCTGG CGAAGCAGGT TGACCAGACC GAAGTTCATC TGGTTGGTGC TTATCCCATT
ACCCCCATCA ATATTGCCAT TGAACTGCCT GATTTCGATC CCAGCGTCTA CAACGACGCG
ATTCGCGGGC AACACCTTAT CGCGATGAAA TCGCTACGGC AGAAATTCGG TCTGGATGAA
CGTGTGACGC ACGTAGAAAA AGGCCTGCCA GAAGAAGTGA TTCCCGACCT TGCCGAACAT
TTGCAAGCGG GCGTCGTGGT GTTGGGGTCA CTGGGCAGAA CTGGCCTTTC CGCTGCTTTT
ATCGGAAATA CCGTCGAGCA TGTCATCGAT CACCTGAAAT GTGATCTGCT TGCGATCAAG
CCCGATGATT TCGTGTCACC GCTGACGTTG GAAGACGGCG ATAACAGCTG A
|
|---|
| Protein sequence | MAKYQNLLVA IDPNQDDQPA LRRAVYLVQR LGGRIKAFLP IYDFSYEMTT LLSPDERVEM
RQGVIQQRTE WIAEQCKYYI EAGVPIEIKV VWHNKPFEAI IREVISGQHD LLLKMAHQHD
RLEAVIFTPT DWQLLRKCPC PVWMVKDQPW PTEGRALVAV NLASEDPYHD PLNIKLVSET
LELAKQVDQT EVHLVGAYPI TPINIAIELP DFDPSVYNDA IRGQHLIAMK SLRQKFGLDE
RVTHVEKGLP EEVIPDLAEH LQAGVVVLGS LGRTGLSAAF IGNTVEHVID HLKCDLLAIK
PDDFVSPLTL EDGDNS
|
|---|
| |