Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2044 |
Symbol | |
ID | 8132988 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2348829 |
End bp | 2350046 |
Gene Length | 1218 bp |
Protein Length | 405 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644865334 |
Product | ROK family protein |
Protein accession | YP_003017621 |
Protein GI | 253688431 |
COG category | [G] Carbohydrate transport and metabolism [K] Transcription |
COG ID | [COG1940] Transcriptional regulator/sugar kinase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.463852 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGATATCCG ACGGTCAACC AGGACACATC GATCAAATCA AACAAATGAA TGCCGGGGCG GTGTATCGGC TGATCGATAA GTACGGCCCG ATATCACGTA TCGAACTGTC CAAACGCGCT CAGCTCGCGC CCGCCAGTAT TACCAAAATC GTCCGCGAAC TGCTGGAAGC CCATCTGGTG CAGGAAACCG AATACCAGGA TGTGGGTAGC AGGGGGCGTC CTGCTATCGG TCTGATCCTG GATACCGAAG CCTGGCACTA TCTTTCCGCC CGCATCAGCC ACAATAGTAT TTCCCTGGCG TTGCGCGATC TCAGCAGCAA GCTGGTTGTA GAAGAAGATA TCCCGCTTCC CGCAGAAGCG CCGCAACCGC TGCTTGATCG TATTTTGAAT GAAATCGACC AGTTTTTTAT TCGTCACCAG AAACGGCTGG AGCGATTAAC CGCAATCGCG ATTACCGCGC CGGGTATGAT TGACGCCAAC AAGGGCGTTA TTCACCGCAT GCCGTTCTAT GACGTTGAGG AAATGGCGAT TGGCCCGGCG CTGGAACAGC GTACAGGGCT ACCCGTGTAT TTGCAGCACG ATATTTGTGC CTGGACGATG GCCGAAGCGT TATACGGCGC GGCGCGCGAT TGTCAAAATG TCATTCAGGT GGTAATCGAC CATAACGTCG GCGCGGGCGT GATTACTGGC GGACGCATCC TGCACGCGAG AAGCCGAAAT CTGGTTGAAA TCGGGCACAC CCAGGTCGAT CCCTATGGTA AACGTTGCTA TTGCGGCAAT CACGGCTGTC TGGAAACGGT CGCCAGCACG GAAAATATGC TGGAGTTAGC GCAGCAGCGC ATGAATACAT CCATGAGTTC GCTCCTGCAT GGTTCACCGC TTAACGTTGA GAACCTGTGT GATGCGGCGC TCAAAGGCGA TCAATTAGCC AAAGATATCA TCAACGATGT CGGGAATAAT GTCGGCCGAA TTGTTGCCAT CATGGTGAAT CTCTTCAACC CCGATAAAAT TCTGGTGGGT TCCCCCCTGA ATAAAGCGGC CAGCATTTTG CACCCCGCCA TTTTAGGCTG CATTCAACAG CAGTCATTCC CGCCCTATAG CCATAACATT CAGGTAGAAG CGACCCAGTT CTACAATCAG GGGACAATGC CCGGTGCGGC ATTGGTAAAA GACGCTCTCT ATAACGGATC GCTGCTGGTT AAACTACTTC AGGGATAA
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Protein sequence | MISDGQPGHI DQIKQMNAGA VYRLIDKYGP ISRIELSKRA QLAPASITKI VRELLEAHLV QETEYQDVGS RGRPAIGLIL DTEAWHYLSA RISHNSISLA LRDLSSKLVV EEDIPLPAEA PQPLLDRILN EIDQFFIRHQ KRLERLTAIA ITAPGMIDAN KGVIHRMPFY DVEEMAIGPA LEQRTGLPVY LQHDICAWTM AEALYGAARD CQNVIQVVID HNVGAGVITG GRILHARSRN LVEIGHTQVD PYGKRCYCGN HGCLETVAST ENMLELAQQR MNTSMSSLLH GSPLNVENLC DAALKGDQLA KDIINDVGNN VGRIVAIMVN LFNPDKILVG SPLNKAASIL HPAILGCIQQ QSFPPYSHNI QVEATQFYNQ GTMPGAALVK DALYNGSLLV KLLQG
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