Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2027 |
Symbol | |
ID | 8132971 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2327205 |
End bp | 2328710 |
Gene Length | 1506 bp |
Protein Length | 501 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644865317 |
Product | L-arabinose isomerase |
Protein accession | YP_003017604 |
Protein GI | 253688414 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2160] L-arabinose isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.929629 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCATT TTAAGCAGCT TGAAGTCTGG TTCGTCATCG GTAGCCAGCA CCTCTACGGG CCGGAAACGT TGCGTCAGGT AAAAGAGAAC GCGGAAAAGG TCGTCACCGG GTTGAATCAA CAGGCGAACC TGCCGGTTAA GCTGGTGCTG AAACCGCTGG TGAAAACACC GGACGAAATT CTTGCGCTGT GTCGCGATGC CAACTATCAG GATAACTGTA TCGGCCTGCT GACCTGGCTG CATACGTTCT CTCCAGCCAA AATGTGGATT GGTGGCCTGA GCATACTCAG TAAACCACTG CTGCAATTCC ACACCCAGTT CAATGCCGAA GTGCCGTGGG ATACCATGGA CATGGATTTC ATGAACCTGA ACCAGACCGC GCACGGCGGA CGCGAATTTG GCTTTATCGG TGCCCGGATG CGGCAAGCGC ATCAGGTCGT CGTCGGCCAC TGGCAGGATA AAAACGCCCA TGCCCGTATC GGGAAATGGA TGCGGGTAGC TGCCGCCATT CAGGAAAGTA AACAGCTGAA GGTCGCGCGC TTTGGCGACA ACATGCGTGA AGTCGCCGTC ACCGAAGGCG ATAAAGTCGG CGCGCAGATC CAGTTCGGTT ATTCCGTCAG CGCTTGGGGA CTGGGCGATT TAACCGCCGT GGTTGATGCC GTATCCAAAG GCGATATCAA TGCGCTGGTC GACGAATACG AAGCCAGCTA CCAGTTAACG GATGCGGTGA AACTCAACGG CGCTAACCGC CAGAACCTGC TGGATGCAGC ACAGATCGAA CTCGGGATGA AACGCTTTCT GGAACAAGGC GGCTACCATG CGTTCACTAC CGATTTTGAA AACCTGTATG GCCTGAAACA ACTGCCGGGG CTGGCGGTGC AGCGTCTAAT GCAACAGGGC TATGGTTTCG GTGGCGAAGG CGACTGGAAA ACCGCCGCGC TACTGCGCAT CATGAAAGTG ATGGCCAGCG GTTTGTCGGG CGGAACGTCC TTCATGGAGG ATTACACCTA TAACTTCCAG AATGGTAACG ATCTGGTCGT TGGCTCCCAT ATGCTGGAAG TCTGCCCCAC CATTGCAAAA GAACAGAAAC CGATTCTGGA TGCGCAATAC CTTGGCATTG GTGGAAAAGC CGACCCTGCT CGGTTGATTT TCTCCACGCC AGCCGGGCCG TCACTGAATG CCAGTGTGAT CGACATGGGC GACCGTTTCA GAATGCTGGT TAATCTGGTC GATACGATCG AACAGCCGCA CCCATTGCCG AAATTGCCGG TTGCCCGCGC CATCTGGAAA GCGCAACCGT CGCTGGACGT GGCGGCCGAA GCCTGGATTC TGGCTGGCGG TGCGCATCAC ACCGTCTTTA GTCAGGCGTT AGATCTCGAA CACATGCGGC TCTACGCCGA GATGCAGAAC ATTGAACTGT TGGTGATCGA CAACGAAACC CGACTCCACG AATTCAAAGA TGCGCTGCGC TGGAACGAGG TGTACTACAA GCTGTGTAGT CGCTAG
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Protein sequence | MDHFKQLEVW FVIGSQHLYG PETLRQVKEN AEKVVTGLNQ QANLPVKLVL KPLVKTPDEI LALCRDANYQ DNCIGLLTWL HTFSPAKMWI GGLSILSKPL LQFHTQFNAE VPWDTMDMDF MNLNQTAHGG REFGFIGARM RQAHQVVVGH WQDKNAHARI GKWMRVAAAI QESKQLKVAR FGDNMREVAV TEGDKVGAQI QFGYSVSAWG LGDLTAVVDA VSKGDINALV DEYEASYQLT DAVKLNGANR QNLLDAAQIE LGMKRFLEQG GYHAFTTDFE NLYGLKQLPG LAVQRLMQQG YGFGGEGDWK TAALLRIMKV MASGLSGGTS FMEDYTYNFQ NGNDLVVGSH MLEVCPTIAK EQKPILDAQY LGIGGKADPA RLIFSTPAGP SLNASVIDMG DRFRMLVNLV DTIEQPHPLP KLPVARAIWK AQPSLDVAAE AWILAGGAHH TVFSQALDLE HMRLYAEMQN IELLVIDNET RLHEFKDALR WNEVYYKLCS R
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