Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_2015 |
Symbol | |
ID | 8132959 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2311047 |
End bp | 2313647 |
Gene Length | 2601 bp |
Protein Length | 866 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644865305 |
Product | DNA topoisomerase I |
Protein accession | YP_003017592 |
Protein GI | 253688402 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00844458 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTAAAG CTCTCGTTAT CGTCGAGTCC CCGGCAAAAG CCAAAACGAT CAATAAGTAT TTAGGCAATG ACTACGTGGT GAAATCCAGC GTCGGTCATG TACGCGATTT GCCGACGAGT GGCTCAGTCA GTAAAAAGAG CGCGGACTCA ACGACTAAAG ATAAAACGAA AAAGAAAGTC AAAAAGGATG AAAAATCCGC GCTGGTTAAT CGTATGGGCG TCGACCCTTA CCATGGCTGG CAAGCCAACT ACGAAATACT GCCGGGTAAG GAGAAGGTTG TCTCCGAATT AAAAACGCTG GCGGAAAATG CCGACCACAT CTATCTCGCA ACCGACCTTG ACCGCGAAGG GGAAGCCATT GCCTGGCACC TGCGGGAAAT CATTGGTGGT GAAGATGAGC GTTTCAGTCG CGTGGTGTTT AACGAAATCA CGAAAAATGC CATTAAACAG GCGTTTGAAA AACCAGACAC GTTGAATATT GACCGCGTTA ATGCACAGCA GGCACGTCGG TTTATGGATC GCGTGGTGGG TTACATGGTA TCCCCGCTGC TGTGGAAAAA AATCGCCCGT GGCCTGTCCG CCGGACGCGT GCAGTCGGTT GCGGTTCGCC TGATTGTCGA TCGCGAACGC GAGATCAAGG CGTTTGTGCC GGAAGAATAT TGGGAACTGC ACGCCGATTT ACTGGCAGGC AGCGATATTC AACTGCAAAT GCAGGTAACG CACCACAGCG GCAAGCCGTT TAAACCGGTT AATAAAGAAC AAACACAGGC TGCGGTTAGC CTGCTTGAAA ACGCCCGCTA TGTGGTTGCC GATCGTGAAG ATAAACCGAC CAGCAGCAAA CCGGGCGCGC CGTTCATTAC CTCAACGCTG CAACAGGCCG CCAGTACACG CCTTGGCTTT GGCGTGAAAA AAACCATGAT GATGGCACAG CGTCTGTATG AAGCGGGCTA CATCACTTAC ATGCGTACTG ACTCAACGAA CCTCAGTCAG GATGCCTTGA CGATGGTGCG TGGCTATATT GGCGAAGAAT TCGGCAAGCG TTATCTGCCC GAATCCGCGA ATCTTTACAG CAGCAAAGAA AACTCTCAGG AAGCGCACGA AGCGATTCGT CCTTCCGATG TTGGCGTGCT GGCCGACAGC CTGAAAGATA TGGAAACCGA TGCGCAGAAG TTGTATCAGT TGATTTGGCG TCAGTTCGTC GCCTGTCAAA TGACGCCTGC GCAATACGAC TCCACCACGT TAATCGTGGA AGCGGCCGAT TATCAACTGC GTGCGAAAGG CCGTACGCTG CGTTTCGATG GTTGGACGAA AGTCATGCCT GCGCTGCGTA AAAATGATGA AGACCGCACA TTGCCAACCG TGGCGGTGGG CGAAGCGCTG TCACTGCAGA AACTGCTGCC AGGACAACAC TTCACTAAAC CGCCTGCGCG TTACAGCGAT GCCTCACTGG TTAAAGAACT GGAAAAACGC GGTATTGGCC GTCCGTCTAC CTACGCGTCT ATTATTTCAA CCATTCAGGA TCGCGGCTAT GTCCGAGTGG AGAACCGCCG TTTCTACGCC GAGAAGATGG GCGAAATCGT TACCGATCGA CTGGAAGAAA ACTTCCGCGA ATTGATGAAT TACGATTTCA CCGCGCGGAT GGAAAGCCGT CTCGATCAGG TTGCCAATAA TCAGGCGGAA TGGAAAGCGG TGTTGGATGA GTTCTTCAAC GAATTCAGCC AGCAGTTGGA AAAGGCAGAG CAGGATCCGG AAGAAGGCGG CATGCGCCCC AATGCGATGG TGTTGACCAG CATTGACTGT CCGACGTGCT CTCGCCAAAT GGGGATTCGT ACCGCCAGTA CCGGGGTGTT CCTAGGCTGT TCCGGTTATG CACTGTCGCC GAAAGAGCGC TGCAAAACCA CGATCAACCT GATACCGGAA AACGAAGTGC TGAACGTGTT GGAAGGCGAT GATGCTGAAA CCAATGCGCT GCGTGCCCGT CGTCGCTGTG AAAAATGTGG TACGGCGATG GACAGCTACC TGATTGATAA TCAGCGCAAG CTGCACGTTT GCGGGAATAA CCCAGCCTGT GACGGGTATG AGATCGAAAC CGGCGAATTC CGCATCAAAG GCTATGATGG CCCGATTGTT GAGTGCGAAA AGTGTGGTTC CGAGATGCAT CTCAAAATGG GACGCTTCGG TAAATACATG GCGTGCACCA GCGAGACGTG CTCTAACACG CGTAAGATCT TGCGTAATGG CGATGTTGCG CCACCGAAGG AAGATCCGGT GCCGTTGCCT GAGCTGCCTT GCGAGAAGTC CGATGCTTAT TTCGTGTTGC GTGACGGTGC AGCAGGGGTG TTCCTTGCCG CTAATACGTT CCCGAAATCT CGCGAAACGC GGGCACCGCT GGTAGAAGAA TTAGTGCGCT TCAAGGATCG TCTGCCAGAA AAACTGCGCT ATTTGGCGGA AGCGCCAGTG GTCGATAAAG ATGGCAACAA GACGCAGGTG CGTTTCAGCC GTAAGACCAA ACAGCAATAT GTCTCGTCAG AAAAAGACGG CAAGGCAACG GGCTGGTCAG CGTTCTATAT CGATGGCAAA TGGGTTGAAG GCAAGAAGTA A
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Protein sequence | MGKALVIVES PAKAKTINKY LGNDYVVKSS VGHVRDLPTS GSVSKKSADS TTKDKTKKKV KKDEKSALVN RMGVDPYHGW QANYEILPGK EKVVSELKTL AENADHIYLA TDLDREGEAI AWHLREIIGG EDERFSRVVF NEITKNAIKQ AFEKPDTLNI DRVNAQQARR FMDRVVGYMV SPLLWKKIAR GLSAGRVQSV AVRLIVDRER EIKAFVPEEY WELHADLLAG SDIQLQMQVT HHSGKPFKPV NKEQTQAAVS LLENARYVVA DREDKPTSSK PGAPFITSTL QQAASTRLGF GVKKTMMMAQ RLYEAGYITY MRTDSTNLSQ DALTMVRGYI GEEFGKRYLP ESANLYSSKE NSQEAHEAIR PSDVGVLADS LKDMETDAQK LYQLIWRQFV ACQMTPAQYD STTLIVEAAD YQLRAKGRTL RFDGWTKVMP ALRKNDEDRT LPTVAVGEAL SLQKLLPGQH FTKPPARYSD ASLVKELEKR GIGRPSTYAS IISTIQDRGY VRVENRRFYA EKMGEIVTDR LEENFRELMN YDFTARMESR LDQVANNQAE WKAVLDEFFN EFSQQLEKAE QDPEEGGMRP NAMVLTSIDC PTCSRQMGIR TASTGVFLGC SGYALSPKER CKTTINLIPE NEVLNVLEGD DAETNALRAR RRCEKCGTAM DSYLIDNQRK LHVCGNNPAC DGYEIETGEF RIKGYDGPIV ECEKCGSEMH LKMGRFGKYM ACTSETCSNT RKILRNGDVA PPKEDPVPLP ELPCEKSDAY FVLRDGAAGV FLAANTFPKS RETRAPLVEE LVRFKDRLPE KLRYLAEAPV VDKDGNKTQV RFSRKTKQQY VSSEKDGKAT GWSAFYIDGK WVEGKK
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