Gene PC1_1989 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1989 
Symbol 
ID8132933 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand+ 
Start bp2286508 
End bp2287542 
Gene Length1035 bp 
Protein Length344 aa 
Translation table11 
GC content55% 
IMG OID644865279 
Productoligopeptide/dipeptide ABC transporter, ATPase subunit 
Protein accessionYP_003017566 
Protein GI253688376 
COG category[E] Amino acid transport and metabolism 
COG ID[COG4608] ABC-type oligopeptide transport system, ATPase component 
TIGRFAM ID[TIGR01727] oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACAACG CGGACGAGAA AAAGGTGTTG TTAGAAGTGG ACGATCTGAA AGTCCACTTT 
GATGTCAGAG ATGATAAACA GTGGTTCTGG CAGCCGCCGA AAAAACTGAA AGCGGTCGAT 
GGCGTGACGC TGCGCTTATA TGAAGGCGAA ACGCTGGGCG TGGTAGGGGA ATCCGGCTGC 
GGTAAGTCTA CGCTGGCGCG TGCCATTATC GGTCTGGTAA AAGCGACCGA CGGGCGAGTG 
ACCTGGCTGG GGAAAGACCT GCTGGGTATG AGCGACGATC AATGGCGTGC GGCGCGTAGC 
GATATTCAGA TGATATTCCA GGATCCGCTT GCGTCGCTGA ATCCGCGTAT GACCATCGGT 
GAGATTATTG CGGAGCCGTT AAAGGTTTAT CATCCTGAAC TGGATCGGCA GACGGTAAAA 
GATCGCGTGA AAGCGATGAT GCTGAAGGTT GGGCTGTTGC CGAACCTGAT CAACCGTTAT 
CCGCATGAAT TCTCCGGCGG GCAGTGTCAG CGTATCGGGA TCGCGCGTGC GCTGATTCTG 
GAACCGAAGC TGATTATCTG CGACGAGCCT GTTTCCGCGC TGGACGTGTC GATTCAGGCA 
CAGGTCGTTA ACCTGTTGCG TCAGTTGCAG CGTGAAATGC GCCTGTCGCT GATTTTTATC 
GCGCATGATT TATCGGTGGT GAAGCACATT TCCGATCGCG TGTTGGTGAT GTATCTGGGC 
CATGCGGTGG AGCTGGGAAC GTACGACCAG GTTTATCAAA ATCCACAGCA TCCCTACACC 
CGTGCGCTGA TGTCTGCGGT GCCGATTCCC GATCCCGATC AGGAGCGCAA TAAGCAGATA 
CAACTGCTGG AAGGGGATTT GCCTTCACCG ATCAATCCGC CATCGGGCTG TGTGTTCTGC 
ACCCGCTGCC CAGTTGTCGG CCCTGAGTGC TCGAAAACCC GTCCCTTGCT GGAAGGGAGC 
TTTACACACG CGGTGTCGTG CCTGAAAGTT GATCCTCAGG CATTGTTACC GGTGGAAGAA 
GTCGAAGCTC AGTAA
 
Protein sequence
MNNADEKKVL LEVDDLKVHF DVRDDKQWFW QPPKKLKAVD GVTLRLYEGE TLGVVGESGC 
GKSTLARAII GLVKATDGRV TWLGKDLLGM SDDQWRAARS DIQMIFQDPL ASLNPRMTIG 
EIIAEPLKVY HPELDRQTVK DRVKAMMLKV GLLPNLINRY PHEFSGGQCQ RIGIARALIL 
EPKLIICDEP VSALDVSIQA QVVNLLRQLQ REMRLSLIFI AHDLSVVKHI SDRVLVMYLG 
HAVELGTYDQ VYQNPQHPYT RALMSAVPIP DPDQERNKQI QLLEGDLPSP INPPSGCVFC 
TRCPVVGPEC SKTRPLLEGS FTHAVSCLKV DPQALLPVEE VEAQ