Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1972 |
Symbol | |
ID | 8132915 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2265014 |
End bp | 2266939 |
Gene Length | 1926 bp |
Protein Length | 641 aa |
Translation table | 11 |
GC content | 55% |
IMG OID | 644865261 |
Product | DNA topoisomerase III |
Protein accession | YP_003017549 |
Protein GI | 253688359 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0550] Topoisomerase IA |
TIGRFAM ID | [TIGR01056] DNA topoisomerase III, bacteria and conjugative plasmid |
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Plasmid Coverage information |
Num covering plasmid clones | 7 |
Plasmid unclonability p-value | 0.850932 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGACTTT TTATTGCCGA AAAGCCCAGC CTCGCGCGGG CGATTGCAGA CGTGTTACCC AAACCGCATC GACGTGGCGA TGGCTTTATT GCCTGCGGCC AGAATGATGT CGTGACGTGG TGCGTAGGAC ACCTGCTGGA GCAGGCGCAG CCGGATGTTT ATGATGCGCG CTACGCCCGG TGGTCTCTTG CCGATTTACC TATCATTCCT CAGAAATGGT TGCTGCAACC GCGTCCCTCG GTCAGTAAGC AGTTGAACAC CATTAAAAAG CTCCTGAATG ATGCCAACGA AGTGATCCAC GCGGGAGACC CCGATCGTGA AGGGCAACTG CTGGTGGATG AAGTGTTGGA ATATCTGGCT TTGCCGGAAG AGAAACGCCA GCAGGTGCGT CGTTGCCTGA TCAATGATCT CAACCCACAG GCGGTAGAGC GCGCGGTTTC TCGTTTGCGT GAGAACCGAG AGTTCATTCC TTTGTGCGTG TCGGCACTGG CGCGTTCCCG TGCAGATTGG CTCTACGGCA TTAACATGAC CCGTGCCTAT ACGCTATTAG GACGCAATGC CGGCTATGAT GGCGTGTTGT CGGTTGGCCG CGTGCAAACG CCGGTGCTGG GGCTGGTGGT GCGGCGGGAT GAAGAAATCG AAAACTTCGT TGCCAAAGAT TACTTTGAAG TGAAAGCCCA TATCGTGACG CCTGCCGATG AGCGCTTTGT CGCACTCTGG CAGCCCAGCG AATCCTGTGA ACCTTATCAG GATGAAGAAG GGCGGTTATT GCATCGTTCT CTGGCAGAAC ATGTCGTCAA ACGTATTGAA GGCCAGCCCG CGTTTGTCAC CAGCTATAAT GATAAACGGG AATCGGAAAC CGCGCCGCTC CCTTATTCGC TGTCGACACT ACAGATCGAA GCGGCGAAGC GTTTCGGGCT GAGTGCTCAA CAAGTGCTGG ATGTGTGCCA GAAACTCTAT GAAACCCATA AGCTGATCAC CTATCCGCGT TCTGATTGCC GCTATCTGCC CGAGGAACAT TTTGCCGGGC GTCACGCCGT CTTAAACGCG ATATCCGTGC ACCAGCCGGA TCTACTGCCA CAGCCGGTTA TGGATGTGGA TCGACGCAAC CGTTGCTGGG ACGATGGTAA GGTCGATGCT CACCACGCAA TTATTCCTAC CGCTCGTAGC GCAAGCGCCT CGCTGACGGA AAATGAGCGT AAAGTGTATG GTTTAGTTGC ACGGCAATAC ATCATGCAAT TTTGCCCAGA CGCCGTGTTC CGCAAGTGTG TCATTGAACT GGATATTGCA GGGGGTAAAT TTATTACCAA AGCACGGTTC CTGGCCGAAG CCGGGTGGCG CACGCTGCTG GGCGGTAAAG AACGCGACGA AGAAAACGAA GGCATGCCGT TGCCCGTGGT GGCAAAAGGT GATGAGCTAC TGTGTGAACG CGGTGAAGTG GTTGAGCGCC AAACGCAGCC GCCGCGACCG TTTACCGATG CGACGTTGCT GTCGGCGATG ACGGGTATCG CGCGTTTTGT GCAGGATAAA GAACTGAAGA AAATCCTACG GGCGACCGAT GGATTAGGCA CAGAGGCGAC GCGAGCAGGT ATCATCGAAT TATTATTTAA ACGGACGTTT CTATTTAAGA AAGCGCGCTA TATTCACGCG AGTGAAGCGG GACGGGCGTT GATTCACTCA CTGCCTGCCA GTGCAGCACA CCCAGACATG ACGGCGCATT GGGAAGCCAC GTTGACACAA ATCAGCGAGA AGAAATGCCG CTATCAGGAT TTTATGCAGC CGCTGACTCA TTCCCTGCAG GAGCTGATTC AGCAGGCCAA ACAAAACGGT GCGGTGAGAG CGTTTAAAGG GCTTTCCGCG CCGCAGTCGG GTGCCGCAAA ACGGCGCAAG CCTCAGACTA AAAAAGCGAA GGAGCAGGAG CAATGA
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Protein sequence | MRLFIAEKPS LARAIADVLP KPHRRGDGFI ACGQNDVVTW CVGHLLEQAQ PDVYDARYAR WSLADLPIIP QKWLLQPRPS VSKQLNTIKK LLNDANEVIH AGDPDREGQL LVDEVLEYLA LPEEKRQQVR RCLINDLNPQ AVERAVSRLR ENREFIPLCV SALARSRADW LYGINMTRAY TLLGRNAGYD GVLSVGRVQT PVLGLVVRRD EEIENFVAKD YFEVKAHIVT PADERFVALW QPSESCEPYQ DEEGRLLHRS LAEHVVKRIE GQPAFVTSYN DKRESETAPL PYSLSTLQIE AAKRFGLSAQ QVLDVCQKLY ETHKLITYPR SDCRYLPEEH FAGRHAVLNA ISVHQPDLLP QPVMDVDRRN RCWDDGKVDA HHAIIPTARS ASASLTENER KVYGLVARQY IMQFCPDAVF RKCVIELDIA GGKFITKARF LAEAGWRTLL GGKERDEENE GMPLPVVAKG DELLCERGEV VERQTQPPRP FTDATLLSAM TGIARFVQDK ELKKILRATD GLGTEATRAG IIELLFKRTF LFKKARYIHA SEAGRALIHS LPASAAHPDM TAHWEATLTQ ISEKKCRYQD FMQPLTHSLQ ELIQQAKQNG AVRAFKGLSA PQSGAAKRRK PQTKKAKEQE Q
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