Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1936 |
Symbol | |
ID | 8132879 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2229638 |
End bp | 2231356 |
Gene Length | 1719 bp |
Protein Length | 572 aa |
Translation table | 11 |
GC content | 52% |
IMG OID | 644865225 |
Product | long-chain-fatty-acid--CoA ligase |
Protein accession | YP_003017513 |
Protein GI | 253688323 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.451048 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCCACTAA AAAAATATCT CGGGAGTGAC GTCTTGGAAA AAATTTGGTT ATCACGCTAT CCGGCGGACG TGCCGGCGGA AATCGATCCG GATCGCTATT CGTCGTTGAT TGAAATGTTC GAAACTAGCG TGAAGCGTTA TGCCGATCGA CCTGCCTTCG TCAACATGGG TGAAGTGATG ACGTTTCGTA AGCTGGAAGA GCGGAGTCGG GCGTTTGCGG CCTATCTGCA AAACCAGCTT AAATTGCAAA AGGGCGATCG TGTCGCGTTG ATGATGCCCA ATCTACTGCA ATATCCCGTT GCGCTGTTTG GCGTGTTGCG CGCGGGTCTG GTGGTGGTTA ACGTTAACCC ACTGTATACG CCGCGTGAGC TGGAACATCA GCTAAAAGAC AGCGGGGCCA GCACGATAGT CATCGTGTCT AACTTCGCGC ATACGCTGGA AAAAGTCGTT CATAACACGG CGGTGAAACA CGTCATCCTC ACCCGTATGG GAGATCAGCT CTCCACGGCG AAAGGGACGC TGGTCAATTT CGTGGTGAAA TATATTAAGC GGCTGGTGCC TAAGTATCAT CTGCCGGATG CGATATCGTT CCGTCGTGTT TTGCAGGAAG GACGGCGTCA GCAGTATATT CGCCCCGATA TTATCAATAC CGATCTGGCA TTTCTGCAAT ATACCGGTGG CACCACGGGC GTCGCTAAAG GCGCGATGCT GACGCACCGC AATATGCTGG CGAATCTTGA ACAGTGTAAA GGGGCATACG GCGCTATTCT GCAAGAAGGG AATGAGCTGG TGATCACGGC GTTGCCGCTC TATCATATTT TTGCGCTCAC GGTGAACGGC CTTTTGTTCC TTGAATTGGG CGGTAAGAAC CTGTTGATCA CTAACCCCCG CGATATTCCG GCGGTTGTGA AGGAACTGAA ACAATACCCG TTTACGGCTA TCACTGGCGT TAATACGTTA TTTAACGCAC TGCTTAACAA CAAAGAATTC CACGAGCTGG ATTTCTCAAC GCTGCGTTTA GCGGTCGGCG GTGGAGCATC GGTACAGCAA GCGGTGGCAG AACGTTGGGA AAAACTAACG GGTAAACATC TGCTTGAAGG ATATGGGTTA ACGGAAAGTT CACCTCTGGT GGCCGTAAAC CCTTACGATC TCAAACATTA CAGCGGCAGT ATCGGGCTAC CGGTGTCATC CACGGACGTC AAAATCATTG ACGATGACGG CAACGATGCT GGGCCGGGTG AGTCTGGCGA GCTGTGGGTG CGCGGGCCGC AGGTGATGTT AGGGTATTGG CAGCAGCCTG CCGCGACGGA TGAAGTGTTA AAAGACGGCT GGCTGGCAAC GGGTGACATT GTCACCTCTG ATGATGAAGG GTTCCTGCGT GTCATCGACC GCAAGAAAGA TATGATCCTG GTGTCCGGCT TTAACGTCTA TCCGACGGAA ATTGAAGATG TTATCAGCCG TCATCCCAAA GTGTCCGAGT CAGCGGTGAT TGGGGTGGCG AATGAGGTAT CCGGTGAAGC AGTCAAAGCC TTTGTGGTCA GGCGTGATAA CTCGTTAACG AAAGAGGAAC TCATTACCCA CTGTCGCCGA AATCTTACCG GTTATAAAGT GCCGAAAGAG ATCGAATTCT GCGACGATTT GCCGAAATCT AACGTGGGGA AAATCCTACG CCGCGAATTG CGCGACGATA AGAAGGTGAA GAAAGACGCT GCCGCCTGA
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Protein sequence | MPLKKYLGSD VLEKIWLSRY PADVPAEIDP DRYSSLIEMF ETSVKRYADR PAFVNMGEVM TFRKLEERSR AFAAYLQNQL KLQKGDRVAL MMPNLLQYPV ALFGVLRAGL VVVNVNPLYT PRELEHQLKD SGASTIVIVS NFAHTLEKVV HNTAVKHVIL TRMGDQLSTA KGTLVNFVVK YIKRLVPKYH LPDAISFRRV LQEGRRQQYI RPDIINTDLA FLQYTGGTTG VAKGAMLTHR NMLANLEQCK GAYGAILQEG NELVITALPL YHIFALTVNG LLFLELGGKN LLITNPRDIP AVVKELKQYP FTAITGVNTL FNALLNNKEF HELDFSTLRL AVGGGASVQQ AVAERWEKLT GKHLLEGYGL TESSPLVAVN PYDLKHYSGS IGLPVSSTDV KIIDDDGNDA GPGESGELWV RGPQVMLGYW QQPAATDEVL KDGWLATGDI VTSDDEGFLR VIDRKKDMIL VSGFNVYPTE IEDVISRHPK VSESAVIGVA NEVSGEAVKA FVVRRDNSLT KEELITHCRR NLTGYKVPKE IEFCDDLPKS NVGKILRREL RDDKKVKKDA AA
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