Gene PC1_1933 details

Gene Information

• Locus tag: PC1_1933
• ID: 8132876
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 2225990
• End bp: 2227909
• Gene Length: 1920 bp
• Protein Length: 639 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644865222
• Product: helicase c2
• Protein accession: YP_003017510
• Protein GI: 253688320
• COG category: [K] Transcription; [L] Replication, recombination and repair
• COG ID: [COG1199] Rad3-related DNA helicases

Plasmid Coverage information

• Num covering plasmid clones: 10
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGACGAACG ATCGGGTAAT CGATGATTTT GCGAATGACG GCGCGCTGGC GAAAGCGATC 
ACGGGTTTCA AACCGCGTGA ACCACAGCGG CAGATGGCGC AGGCGGTAAT GCAGGCCATC 
GACGATAAAA CTGCGCTGGT GGTGGAAGCG GGAACCGGAA CTGGTAAAAC CTATGCCTAC 
CTTGCGCCCG CCTTGCGCGC CGATAAAAAA GTCATCATCT CGACAGGTTC AAAAGCGCTA 
CAGGATCAGC TCTACAGTCG CGATTTACCG ACGATTGCGC AGGCGCTGAA GTACAAAGGT 
AAACTTGCGC TGCTGAAAGG CCGCTCGAAC TATCTCTGTC TGGAACGACT CGAACAGCAG 
TCGCTGGGGG GCGGTGATTT ACCCGCTGAA ACGCTGAGCG AATTGGTCAG GCTGCGCGGC 
TGGTCATCCG AAACGACGGA AGGCGATGTT ACGACCTGCT CAGGCGTTGC GGAAGACAGC 
GCGATCTGGC CGTTAGTGAC CAGCACCAAC GATAACTGTC TGGGCAGCGA CTGTCCGCAC 
TACAAAGAGT GCTTCGTGGT GAAAGCGCGA CGCAAGGCGA TGGATGCCGA TATCGTGGTG 
GTTAACCACC ATCTTTATCT GGCGGATATG GTGGTAAAGG AGACCGGTTT TGCGGAGCTG 
ATCCCGGAAA GTGACGTCGT GATTTTCGAT GAAGCCCACC AGATTCCTGA CATTGCCAGC 
CAATATTTCG GTCAGCAGCT TTCGAGCCGC CAACTGCTGG ATTTGGCAAA AGACATCATC 
ATTGCTTACC GCACCGAAGT GCGCGATGCC TCCCAACTGC AAAAAAGTGC CGATCGCCTG 
ACGCAAAGTA CGCAGGATTT TCGGCTGGCG CTGGGTGATC CGGGGTTTCG CGGTAATCTG 
CGCTATGTGC TCGAACAGCC GTCGCTTCAG CGGGCGTTGC TGTTACTGGA TGATGCGCTG 
GAGCTGTGTT ACGACGTCGC GAAACTGTCG CTGGGTCGAT CTGCGCTGCT GGATGCCGCT 
TTTGAGCGCG CCACACTCTA TCGCAACCGA CTGAAGCGAC TGAAAGAAGT ACAACAGCCG 
GGCTATAGCT ACTGGTACGA ATGTAATTCA CGCCATTTCG TGTTGGCGCT GACGCCGCTG 
TCTGTCGCCG ATCGTTTTCG CGAACTGATG AAGGACAAGC CTGCCGCCTG GATATTTACC 
TCCGCGACCT TGTCTGTTAA CGATCAACTC TTCCACTTCA CCGATAGGCT GGGGTTGGAT 
AACGCTAACA CACTCCTGTT ACCCAGCCCG TTTGATTATG CCAATCAGGC GCTGCTCTGC 
GTTCCCCGTC ATTTGCCGGA AACCAACCGC CCCGGTGCGG CGAAAAGGCT GGCGGCGATG 
CTGCAACCGT TGATTGAAGC AAATCAGGGT CGCTGCTTTA TGCTGTGTAC CTCGCATCAG 
ATGATGCGGG ATTTGGCCGC CGAGTTCCGC GCCATGCTGA CGCTACCGGT GCTGCTACAG 
GGAGAGACTG GCAAGGCACA GCTGCTGTCG CAGTTTGTAT CGGCGGGCAA TGCCTTACTG 
GTGGCGACCA GCAGCTTTTG GGAAGGTGTG GATGTGCGTG GCGATACGCT CTCCTGCGTC 
ATTATCGATA AACTGCCGTT TACCTCGCCG GACGATCCGC TGCTGAAGGC GCGTATCGAA 
GACTGTCGGC TGCGCGGCGG CGAGCCTTTT GACGATGTGC AGGTTCCCGA TGCGGTGATT 
ACGTTGAAAC AAGGCGTGGG TCGTCTCATC CGTGACGTTG AGGATCGCGG TGTGATTGTG 
ATTTGCGATA ATCGACTGGT GATGCGTCCG TATGGCGCCG TGTTTCTCAA CAGCCTGCCG 
CCAACGCCGC GGACCCGCGA CATTCGGCAG GCAATTAATT TCCTGACGCG TAACACATAA 

 

Protein sequence

MTNDRVIDDF ANDGALAKAI TGFKPREPQR QMAQAVMQAI DDKTALVVEA GTGTGKTYAY 
LAPALRADKK VIISTGSKAL QDQLYSRDLP TIAQALKYKG KLALLKGRSN YLCLERLEQQ 
SLGGGDLPAE TLSELVRLRG WSSETTEGDV TTCSGVAEDS AIWPLVTSTN DNCLGSDCPH 
YKECFVVKAR RKAMDADIVV VNHHLYLADM VVKETGFAEL IPESDVVIFD EAHQIPDIAS 
QYFGQQLSSR QLLDLAKDII IAYRTEVRDA SQLQKSADRL TQSTQDFRLA LGDPGFRGNL 
RYVLEQPSLQ RALLLLDDAL ELCYDVAKLS LGRSALLDAA FERATLYRNR LKRLKEVQQP 
GYSYWYECNS RHFVLALTPL SVADRFRELM KDKPAAWIFT SATLSVNDQL FHFTDRLGLD 
NANTLLLPSP FDYANQALLC VPRHLPETNR PGAAKRLAAM LQPLIEANQG RCFMLCTSHQ 
MMRDLAAEFR AMLTLPVLLQ GETGKAQLLS QFVSAGNALL VATSSFWEGV DVRGDTLSCV 
IIDKLPFTSP DDPLLKARIE DCRLRGGEPF DDVQVPDAVI TLKQGVGRLI RDVEDRGVIV 
ICDNRLVMRP YGAVFLNSLP PTPRTRDIRQ AINFLTRNT