Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1910 |
Symbol | |
ID | 8132853 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 2204369 |
End bp | 2205205 |
Gene Length | 837 bp |
Protein Length | 278 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644865199 |
Product | 5-keto-4-deoxyuronate isomerase |
Protein accession | YP_003017487 |
Protein GI | 253688297 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG3717] 5-keto 4-deoxyuronate isomerase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000905199 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAGTTC GTCAAAGCAT TCACAGCGAT CACGCGAAGC AACTGGATAC CGCCGGCCTA CGTCGTGAAT TTCTGATCGA GCAGATTTTT TCTGCCGATG CCTACACTAT GACCTATAGC CACATCGACC GAATCATCGT CGGTGGCATT ATGCCCGTAC ACAGCGCCGT GACGATTGGC GGTGAAGTGG GCAAACAACT CGGCGTCAGC TATTTCCTGG AACGTCGCGA ATTCGGCGCC ATCAATATTG GTGGCGCAGG CATCGTGACT GTCGATGGCG AACGCTATGA CGTGGGTAAT GAAGAAGCAA TCTATGTTGG TATGGGCGTG AAAGACGTGC AATTTACCAG CGCCGATGCG GCTAATCCCG CCAAGTTCTA CTACAACAGC GCGCCAGCAC ATACGACATA CCCTACCCGC AAGATTACTC AGGCTGACGC CTCACCACAA ACTGTGGGTG AAGATGCCAG TTGCAATCGC CGTACAATTA ATAAATACAT CGTTCCCGAT GTACTGCCGA CCTGCCAGCT CACAATGGGA TTAACCAAGC TGGCCGAAGG CAGCCTATGG AACACCATGC CTTGTCATAC GCATGAGCGC CGAATGGAAG TCTATTTCTA TTTTGACATG GACGATGAAA CGGCCGTTTT CCACATGATG GGTCAGCCGC AAGAAACCCG TCACATAGTT ATAAAAAACG AGCAGGCGGT GATTTCACCG AGCTGGTCGA TTCATTCCGG TGTTGGCACC AGACGCTACA CCTTCATCTG GGGCATGGTT GGCGAGAATC AGGTTTTCGG TGACATGGAT CACGTCAAGG TTAGCGAGTT ACGTTAA
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Protein sequence | MQVRQSIHSD HAKQLDTAGL RREFLIEQIF SADAYTMTYS HIDRIIVGGI MPVHSAVTIG GEVGKQLGVS YFLERREFGA INIGGAGIVT VDGERYDVGN EEAIYVGMGV KDVQFTSADA ANPAKFYYNS APAHTTYPTR KITQADASPQ TVGEDASCNR RTINKYIVPD VLPTCQLTMG LTKLAEGSLW NTMPCHTHER RMEVYFYFDM DDETAVFHMM GQPQETRHIV IKNEQAVISP SWSIHSGVGT RRYTFIWGMV GENQVFGDMD HVKVSELR
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