| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1909 |
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| Symbol | |
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| ID | 8132852 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 2203526 |
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| End bp | 2204287 |
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| Gene Length | 762 bp |
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| Protein Length | 253 aa |
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| Translation table | 11 |
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| GC content | 50% |
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| IMG OID | 644865198 |
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| Product | 2-deoxy-D-gluconate 3-dehydrogenase |
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| Protein accession | YP_003017486 |
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| Protein GI | 253688296 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | [TIGR01832] 2-deoxy-D-gluconate 3-dehydrogenase |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00371976 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTTTAA ATTCTTTTGA TTTGCAAGGT AAAGTTGCTC TTATCACTGG TTGTGATACG
GGTTTGGGTC AGGGTATGGC TATCGGTCTG GCACAAGCCG GTTGTGATAT CGTCGGCGTC
AACATCGTTG AACCGAAAGA CACCATCGAA AAAGTCACTG CACTGGGACG CCGTTTCCTG
AGCCTGACCG CTGACATGAG CAACGTCGCT GGTCATGCTG AACTGGTAGA AAAAGCCGTT
GCTGAATTTG GCCACGTTGA CATCCTGGTC AACAACGCCG GTATCATCCG TCGTGAAGAT
GCGATCGATT TCAGCGAGAA AAACTGGGAC GACGTAATGA ACCTGAACAT TAAGAGCGTG
TTCTTTATGT CTCAGACCGT TGCGCGCCAG TTCATCAAAC AAGGTAAAGG CGGCAAGATC
ATCAACATCG CTTCTATGCT GTCCTTCCAG GGTGGTATCC GCGTACCTTC TTATACTGCG
TCAAAAAGCG CCGTTATGGG CATCACTCGT TTGATGGCGA ACGAATGGGC AAAACACGGT
ATCAACGTCA ACGCAATTGC ACCGGGATAT ATGGCTACCA ACAATACCCA GCAGCTGCGC
GCCGATGAAG AACGCAGTAA AGAAATTCTG GATCGTATCC CGGCAGGTCG TTGGGGCTTA
CCGCAGGACC TGATGGGCCC ATCAGTATTC CTGGCTTCCA GCGCATCTGA CTACATCAAC
GGTTACACGA TTGCTGTTGA TGGCGGCTGG CTGGCTCGCT AA
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| Protein sequence | MILNSFDLQG KVALITGCDT GLGQGMAIGL AQAGCDIVGV NIVEPKDTIE KVTALGRRFL
SLTADMSNVA GHAELVEKAV AEFGHVDILV NNAGIIRRED AIDFSEKNWD DVMNLNIKSV
FFMSQTVARQ FIKQGKGGKI INIASMLSFQ GGIRVPSYTA SKSAVMGITR LMANEWAKHG
INVNAIAPGY MATNNTQQLR ADEERSKEIL DRIPAGRWGL PQDLMGPSVF LASSASDYIN
GYTIAVDGGW LAR
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