| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1877 |
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| Symbol | |
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| ID | 8132820 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 2165898 |
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| End bp | 2168066 |
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| Gene Length | 2169 bp |
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| Protein Length | 722 aa |
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| Translation table | 11 |
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| GC content | 49% |
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| IMG OID | 644865166 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s) |
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| Protein accession | YP_003017454 |
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| Protein GI | 253688264 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCCGTG CCCCAGTAAG CAAAGATGAA GACAAACGTC TTGCTGCTCT TCGTGAGTAT
GGAATTAAGA ACGTATTATT TGACCCGAGT CTGAGTAACC TGATTAGCCT GGCCGCTAAC
ATCTTTAATG TGCCTATCGT TTTGGTGTCG TTAGTGGAGG CTGAACGCCA ACTGTTTGCT
GCCAGCGTGG GGGTTCCTTT TTGTGAAACG TCCCGCGATA TCTCTTTTTG TGCGCATACG
ATCCTGAAGA AAAAGATCAT GGTGGTGCCT GATGCACTCA AGGATGCGCG TTTTAGAAAT
AACCCGCTGG TGGTGGGCGT TCCCTATATT CGTTTTTATG CTGGCATTCC TTTAATTACG
CCGTCCGGGC ATGCCATTGG CACCTTGTGC ATTATCGACT TGAAACCCCG ATCGACATTC
ACCAAACGTG ATGAGCATAA TTTGCAGGAT TTGGCTTCAT TAGTAATGGA CAAGCTGGAA
ATGCGGCGTC TGGAGCTGGC GCGTAGAGCC AGTCAGGTTC GTTTTGAAAA TATTGCCAAT
ACCTCGCCTG ATACCATTCT GTGCGTTAAT GAGAAGGGGA TGATTACCTT CTGGAATACC
GCTGCGGAAC ATATGCTGGA ATATACTGAC GAAGAAATCA TTGGCCGCAG TATTAATACC
ATCGTGCCCG ATGCTTTTGT TGTGCAGCTT AATCACCTGG TTGCCGATCG TGATTCGCTG
ATGAAAGGCG TGACGCTGGA ACTGAATGTG CAAGCCAAAA GCGGTAGCCT GGTTCCGGTT
GAATTGTCGG TTTCAATGTG GGAAGACAAC GACAATATTA GCTATGGCGC AATATTGCGT
GACATTACAG AGAGGCGGCG CAACGAAGAA CGCCTGTTTT TGCTGGCGCA TCTGGATCCG
TTAACCGGAT TGGCAAACCG GACGCTATTG ACATCTAATC TGGAAACAGC GCTAAAGAAT
GAACCTGCGG TCTGCATCAT GATGGTGGAT CTGGACGGGT TTAAAGATGT GAATGACAGT
CTGGGGCATT CCAGCGGCGA TAATATTCTG GTGCACGTTG CTAAAAAAAT AAAAGCTACG
GTTCGCTCCG GTGATGTGGT AGCGCGAATG GGCGGGGATG AATTTGCGCT GTTGTTTCCC
GGTCTGAATG ATAAAAAAGT CGCGGGCAAA ATTGCTGAGC AAATTATTCA TGAAATTTCT
CAGGCGATGA TTATTGACGA TCATCAAATC AATATTAGCG CCAGCATTGG CGCGGTGTTG
TATCCAGAAT ATGGGCTGAC CGTGCAGGAT CTTTTGACCA GCGCGGATTT AGCGCTGTAT
CAGGCGAAAT CCGAAGGTCG AAACTGTTAC CGCTTTTTTA CGCGCGAACT GCTTGAAGTC
TTTCAGGCCA AGCATGCCTT CCAGCTCGAG TTTGTGCGGG CTTACGAGCA GCATGAATTT
GAGATGTTTT ATCAGCCACA GGTGAAGCTG GCGACAAATG AGATTGTTGG CGCAGAGGCG
CTGCTGCGCT GGCGTCACCC AGAGAGAGGG TTACTTAGCC CTGCCGCCTT TCTTACTGCG
CTGGAAAATG GCCCATGGGC TGAGCGAGTC GGTGATTGGA TCGTCGAAAC GGCATGCCGG
CAGGCAGCGG AATGGTGTCG GGAGAGTGAC CGCTATTTCC GCATCAGCAT TAATCTTTTC
AGCGCACAGT TTCGTACTGG CATGTTGGCG CAAAAAATTA TGGATATCCT TGCGCGTACA
GGATTGCAGC CAAGCTCGTT GGAACTGGAA ATCACGGAAA ATATCATCCT GCGTTATGAT
GAAAATATGC TGCAACCGTT GAAGGCGCTG CGTGACGCGG GAATCGGTAT TGCCTTTGAT
GACTATGGGA CGGGCTATGC GTCGCTCAGT ATGCTTAAAA ACTACCCGGT GACGCGGTTG
AAGATCGATC AGACTTTTGT CAGAACCATG TGTGAATCTC CGCCAGACGC GGCGATTGTC
CGGGCGATCC TGTATCTCGG GAAAAGTTTT GGCTTGGGCG TAATTGCAGA GGGTGTGGAA
ACATTAGAAC AGAGTGAACG ACTGCGGGGC AAAGGGTGTG AGGAAGCACA AGGATACCTG
TTTGGTCATC CGATGCCTGC GGAGGAGTTT ACTCAGCTAC TGAAATTGAA TAAGCCCATA
GACGTTTAA
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| Protein sequence | MSRAPVSKDE DKRLAALREY GIKNVLFDPS LSNLISLAAN IFNVPIVLVS LVEAERQLFA
ASVGVPFCET SRDISFCAHT ILKKKIMVVP DALKDARFRN NPLVVGVPYI RFYAGIPLIT
PSGHAIGTLC IIDLKPRSTF TKRDEHNLQD LASLVMDKLE MRRLELARRA SQVRFENIAN
TSPDTILCVN EKGMITFWNT AAEHMLEYTD EEIIGRSINT IVPDAFVVQL NHLVADRDSL
MKGVTLELNV QAKSGSLVPV ELSVSMWEDN DNISYGAILR DITERRRNEE RLFLLAHLDP
LTGLANRTLL TSNLETALKN EPAVCIMMVD LDGFKDVNDS LGHSSGDNIL VHVAKKIKAT
VRSGDVVARM GGDEFALLFP GLNDKKVAGK IAEQIIHEIS QAMIIDDHQI NISASIGAVL
YPEYGLTVQD LLTSADLALY QAKSEGRNCY RFFTRELLEV FQAKHAFQLE FVRAYEQHEF
EMFYQPQVKL ATNEIVGAEA LLRWRHPERG LLSPAAFLTA LENGPWAERV GDWIVETACR
QAAEWCRESD RYFRISINLF SAQFRTGMLA QKIMDILART GLQPSSLELE ITENIILRYD
ENMLQPLKAL RDAGIGIAFD DYGTGYASLS MLKNYPVTRL KIDQTFVRTM CESPPDAAIV
RAILYLGKSF GLGVIAEGVE TLEQSERLRG KGCEEAQGYL FGHPMPAEEF TQLLKLNKPI
DV
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