Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1735 |
Symbol | rpsA |
ID | 8132677 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 2005658 |
End bp | 2007331 |
Gene Length | 1674 bp |
Protein Length | 557 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 644865023 |
Product | 30S ribosomal protein S1 |
Protein accession | YP_003017312 |
Protein GI | 253688122 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0539] Ribosomal protein S1 |
TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0109338 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACTGAAT CTTTTGCTCA ACTCTTTGAA GAATCCCTGA AAGAAATCGA AACCCGTCCT GGTTCCATCG TACGCGGTGT TGTTGTTGCT ATTGACAAAG ATGTCGTACT GGTTGACGCC GGTCTGAAAT CTGAATCTGC CATTCCGGTA GAGCAATTCA AGAACGCACA GGGCGAACTG GAAATTCAGG TTGGTGATGA AGTTGACGTT GCTCTGGACG CTATCGAAGA TGGCTTCGGT GAAACGCTGC TTTCTCGCGA AAAAGCTAAA CGACATGAAG CATGGCTGAC GCTGGAAAAA GCCTACGAAG AAGCTGCAAC TGTTACCGGT ATTATCAACG GTAAAGTTAA AGGCGGTTTC ACTGTTGAGC TGAACGGCAT TCGTGCGTTC CTGCCAGGTT CTCTGGTAGA CGTTCGTCCG GTTCGCGACA CGCTGCATCT GGAAGGCAAA GAGCTTGAGT TCAAAGTTAT CAAGCTGGAT CAGAAACGCA ACAACGTTGT TGTTTCCCGC CGTGCAGTTA TCGAATCTGA AAACAGCGCT GAGCGCGATC AACTGCTGGA AAACCTGCAG GAAGGCATGG AAGTTAAAGG TATCGTTAAG AACCTTACTG ACTACGGTGC ATTCGTTGAT CTGGGCGGCG TTGATGGCCT GCTGCATATC ACTGATATGG CTTGGAAACG TGTTAAACAC CCAAGCGAAA TCGTCAATGT GGGCGACGAA ATCACTGTTA AAGTGCTGAA GTTCGACCGC GAGCGTACTC GTGTATCTCT GGGCCTGAAA CAGCTGGGCG AAGATCCATG GGTTGCTATC GCTAAACGTT ACCCAGAAAG CACGCGTCTG ACTGGCCGCG TGACTAACCT GACTGACTAC GGCTGCTTCG TTGAAATCGA AGAAGGCGTT GAAGGCCTGG TACACGTTTC CGAAATGGAT TGGACCAACA AAAACATCCA CCCATCCAAA GTTGTTAACG TTGGTGATGT AGTGGAAGTG ATGGTTCTGG ATATCGACGA AGAACGTCGT CGTATCTCTC TGGGCCTGAA ACAGTGCAAA TCTAACCCAT GGCAGCTGTT CGCAGAAACC CACAACAAGG GCGACCGCGT TGAAGGTAAA ATCAAGTCTA TCACTGACTT CGGTATCTTC ATCGGTCTGG ACGGCGGCAT CGATGGTCTG GTGCACCTGT CCGACATCTC CTGGAACGTG GCTGGCGAAG AAGCCGTTCG CGAATACAAG AAAGGTGATG AAATCGCCGC TGTTGTTCTG CAGGTTGACG CAGAGCGCGA GCGTATCTCC CTGGGCGTGA AACAACTGGC TGAAGATCCG TTCAATAACT ACCTGTCTGT TAACAAGAAA GGTGCTATTG TTACTGGTAA AGTTACAGCA GTTGACGCCA AAGGTGCTAC AGTTGAATTA GCAGACGGCG TAGAAGGCTA CCTGCGTGCT TCTGAAGCCT CTCGCGACCG CGTTGAAGAC GCAACACTGG TTCTGAACGT TGGCGACAGC GTTGAAGCGA AATACACCGG TGTTGATCGT AAAAACCGCG TTGTTAGCCT GTCTGTTCGT GCGAAAGACG AAGCTGACGA GAAAGATGCA ATTGCAACTG TCAACAACAA GCCTGAAGAA AGCAATTTCT CCAACGCAAT GGCAGAAGCG TTCAAAGCAG CTAAAGGCGA GTAA
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Protein sequence | MTESFAQLFE ESLKEIETRP GSIVRGVVVA IDKDVVLVDA GLKSESAIPV EQFKNAQGEL EIQVGDEVDV ALDAIEDGFG ETLLSREKAK RHEAWLTLEK AYEEAATVTG IINGKVKGGF TVELNGIRAF LPGSLVDVRP VRDTLHLEGK ELEFKVIKLD QKRNNVVVSR RAVIESENSA ERDQLLENLQ EGMEVKGIVK NLTDYGAFVD LGGVDGLLHI TDMAWKRVKH PSEIVNVGDE ITVKVLKFDR ERTRVSLGLK QLGEDPWVAI AKRYPESTRL TGRVTNLTDY GCFVEIEEGV EGLVHVSEMD WTNKNIHPSK VVNVGDVVEV MVLDIDEERR RISLGLKQCK SNPWQLFAET HNKGDRVEGK IKSITDFGIF IGLDGGIDGL VHLSDISWNV AGEEAVREYK KGDEIAAVVL QVDAERERIS LGVKQLAEDP FNNYLSVNKK GAIVTGKVTA VDAKGATVEL ADGVEGYLRA SEASRDRVED ATLVLNVGDS VEAKYTGVDR KNRVVSLSVR AKDEADEKDA IATVNNKPEE SNFSNAMAEA FKAAKGE
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