Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1677 |
Symbol | |
ID | 8132619 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1935634 |
End bp | 1937466 |
Gene Length | 1833 bp |
Protein Length | 610 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 644864965 |
Product | glycosyl transferase family 8 |
Protein accession | YP_003017254 |
Protein GI | 253688064 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1442] Lipopolysaccharide biosynthesis proteins, LPS:glycosyltransferases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGATCAAA AAGACCAAGA TTTACTTATT CCACACGATA GTTTATTACC ACATCCCCCA GAACATATTA GAATAGAACC AACTATTCAC CCTGTAAAAG AATTTTATTC CATTACACAA CCAACTCAGG ATATTCACTC GGAAGTATTT AAAACATTGC TCAATAGACA TGATGCAAAG GAAGTGATTG AAATAATACG GCAGAGAATG CCAGAACTGA CTTTAGCTCA TGTGTCAGCC CACTATTTAC AACTCTGCCT GATGTACGGT GCCGATCGCG GTGTGGCCAA CCTGTTTCAA AAGATCAGAA TGCGCTACAA CCGAAGCACT CATCATAATC TTGTTAATGT CGCAACACGT TTGATTAACA ACAGTTTCAT GAACGAGGCT AATACGATTA TTTTGCACTT ATCAGAGTTC GCTAGTCGGC ATCCAGCTCA ACGTATTTTG CGCTTAAAAT ACCTGTTTGC CCTCGAACAA CTTGATGAGC TGAGCGAGAT GTTTAAAGAC ATCCCATTAA GGGATTACCA AACCTCGGAC GAACTGATTG CACTTCGAGT CAAATATGAC TGTGTCATGG GGAACCCATC TGCTGGCCTG GAATGGTTAA TCGCATTAGC ACCTCTCGAC ACACTTCCTC CCCGCTTACT CCAGTGGGCG GTGGACTGCA TGACGACACT AGAACGGTAC GAGGAGGCGG TCCCCTTACT GGAGGCGTGG TTTAGCCTTG ATTTCTCTTA TCGGAGAGAT ACCAAGCGCG TACTGCGGGT GGCAGAAAAA ACGGGGGAAA CCCCCAGATT GGTGCTGGCT ATCGAACGCC TCCATGGCTG GTTTACCTGC CCTGATTTGG TCCGCTTACG CACGACGCTG CTTCAGGCTT ATTCCCCTCC ACACCCCGTT CAAATTAGCG GGACCTCTAC AACAGTCAAC GGCCCGACAT GCGGAGATGC CGCGCTACAG CCAACGAAGC CTCTCTCTGA ATATGCCATA TTTTTCTGTA CTGACGCCGA CTTTAGTCTC CCAGCCGTTG TGGCATTAAC ATCGCTGGCG ATGTCGATAG GTGGTGCCAA TAATCTCCCC GACATCTATA TTTTTGTTCC GCCTGAAATT CGCCCGCTTT GGGAACGTAT TGCCGAGCGA TTCACGTCAG CATTTCCAAT TATAACGCTA CGAATTGTTT CGACCTTACA GATGGATCTG GATGAAGTCC GTGCGCAATT TGGTTTCTAT AACGTCGGTG AGACATTGAG CACAACCACC TACACGCGAT TCTACGCGAG CCGCTATTTA CACTATATCG GCGTGACCCG TGCGCTTTAT CTCGACTCTG ATATTGTGAT CCTGCATTCG CCCTTATCCC TGCTCTATGA GGATATGCAG GGGTTCCCAT TGGCTGCGCG TACTGACCGA AATACTCCGT TGATAAAGCG CGCTATCCGG CTACATCAGA TCGCCAATGA ACGTTATTTT AATGCTGGAG TGATACTGTT TGATCTGACA CATCCCGCCA TGATCTCTAC CATCAACACT GCAATTACGT ATAGCAAACA AGGAAATAGC CCGTTACTTT TTCTCGATCA ATGCGCGTTG AATAAAGCCA TTTCCGGGCT TTATCTGGCA CTGGATGAGC GCTACAACAG GTTCATACCA CCAAGTAGCG CTACACAAGT GATAGAGGAC AACACCGTCA TTATGCACTT CATTGAAACC CCTAAGCCCT GGCAAGCGGG CTACGCTGGC CAGGGACTCA CGATATGGGG TGAATACCAA CGCCACGCAA TACGCATAAT CGGCGATGAA ATTTTTTGTT CTAGCCCGGT TTGTCCCTCA TGA
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Protein sequence | MDQKDQDLLI PHDSLLPHPP EHIRIEPTIH PVKEFYSITQ PTQDIHSEVF KTLLNRHDAK EVIEIIRQRM PELTLAHVSA HYLQLCLMYG ADRGVANLFQ KIRMRYNRST HHNLVNVATR LINNSFMNEA NTIILHLSEF ASRHPAQRIL RLKYLFALEQ LDELSEMFKD IPLRDYQTSD ELIALRVKYD CVMGNPSAGL EWLIALAPLD TLPPRLLQWA VDCMTTLERY EEAVPLLEAW FSLDFSYRRD TKRVLRVAEK TGETPRLVLA IERLHGWFTC PDLVRLRTTL LQAYSPPHPV QISGTSTTVN GPTCGDAALQ PTKPLSEYAI FFCTDADFSL PAVVALTSLA MSIGGANNLP DIYIFVPPEI RPLWERIAER FTSAFPIITL RIVSTLQMDL DEVRAQFGFY NVGETLSTTT YTRFYASRYL HYIGVTRALY LDSDIVILHS PLSLLYEDMQ GFPLAARTDR NTPLIKRAIR LHQIANERYF NAGVILFDLT HPAMISTINT AITYSKQGNS PLLFLDQCAL NKAISGLYLA LDERYNRFIP PSSATQVIED NTVIMHFIET PKPWQAGYAG QGLTIWGEYQ RHAIRIIGDE IFCSSPVCPS
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