| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1556 |
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| Symbol | |
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| ID | 8132497 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1813727 |
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| End bp | 1815055 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 56% |
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| IMG OID | 644864845 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_003017135 |
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| Protein GI | 253687945 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCGCAT CAGAAATAAG CGAAGAGAGT ATGAACCAGA CGGCGCAGCG TGATGAAAAA
CGCGCGGTGC GTCTGGGATG GTTGCTGGTG CTTGCCGGGT TTGGTGGTTT TCTCCTGTGG
GCACTGTTTG CACCCTTGGA TAAGGGCGTC ATGGTGAATG GCAGCGTCGT GATTTCCGGT
AACCGCAAGG TGGTGCAACA CAATCAGGGC GGTATTGTCG ATAAAATTCA GGTGAAAGAT
GGCGACAGGG TCGAGGCTGG CCAGATTCTG CTAACGCTGA ATGAAGTTGA TGCGCGTTCG
GCGAGTGAAG GGCTGGATGG TCAGTATTTA CAGCTGGTGG CACGGGAAGG GCGACTGCTT
GCCGAGCAGC AGCGTCTGAG CGACATGGTG ATGACACCCC GTTTGCAGCC GCTAGCGGAG
AAACCTGAGA TGAGCGTGAT TACGGCATTG CAGCGTGATT TACTGCGCAG TCGTCAGCAG
TCGCTCAAGC TTGAAGCCGA AGGGATGCGT TCCAGTATTG CGGGCATGGA AGCCTCACTC
AATGCCCAAC GTCAGGTGAT GTCCAGCAAG CAGAAGCAGC GGGAGACGCT GGAGCAACAG
CTACAAGGGC TGCGTTCACT GGCGGCGGAA AACTATGTAC CACGTAACAA AATGCTGGAG
AACGAACGTT TGCTGGCACA GCTTAACGGC GATATCGCCC AGCTGGCGGG GGATATTAAT
CGTACCCGCC GTGATATTGA GCAACAAACG CTGCTGATTG CACAGCGCCA GCAGGAATAC
GACAAGGAAG TGAACAGCGA GCTGGCGGAG GTGCGGGCGC TGCTGAGTGA TGTGGGCAGC
AAGAAGGAAA AAGCCGATTT TAATCTGGCG AATATCCAGA TGCGGGCGCC CGTGTCCGGC
ACGGTGGTCG GGTTGAAAGT GTTTACGGAA GGCGGTGTGA TTGCACCGGG ACAGACGCTG
CTGGAGATCG TACCGGACGA TCAGCCGCTA TTGGTGGATG CGCGCCTCCC TGTGGAGTTG
GTCGATAAAA TCTGGCCGGG GCTACCCGTC GAGTTGCAGT TCGTCGCGTT TAACCAAAGC
ACAACGCCGC GCGTAGCGGG AACGGTCGAG CTGTTGTCTG CCGACCGCCT GTTGGATGAG
CGAGACGGTT CCCCTTATTA CAGCCTGCGC GTGATGGTGG ATGACGAAGG AAAACGTGCA
CTAGAGGGAC TGGAAATCAA ACCTGGCATG CCGGTACAAG GGTTTGTGCG TACCGGAGAG
CGGTCGTTCG TCAATTATCT ATTTAAGCCT TTAATGGATC GCCTGCATCT GGCATTAACG
GAAGAGTAA
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| Protein sequence | MSASEISEES MNQTAQRDEK RAVRLGWLLV LAGFGGFLLW ALFAPLDKGV MVNGSVVISG
NRKVVQHNQG GIVDKIQVKD GDRVEAGQIL LTLNEVDARS ASEGLDGQYL QLVAREGRLL
AEQQRLSDMV MTPRLQPLAE KPEMSVITAL QRDLLRSRQQ SLKLEAEGMR SSIAGMEASL
NAQRQVMSSK QKQRETLEQQ LQGLRSLAAE NYVPRNKMLE NERLLAQLNG DIAQLAGDIN
RTRRDIEQQT LLIAQRQQEY DKEVNSELAE VRALLSDVGS KKEKADFNLA NIQMRAPVSG
TVVGLKVFTE GGVIAPGQTL LEIVPDDQPL LVDARLPVEL VDKIWPGLPV ELQFVAFNQS
TTPRVAGTVE LLSADRLLDE RDGSPYYSLR VMVDDEGKRA LEGLEIKPGM PVQGFVRTGE
RSFVNYLFKP LMDRLHLALT EE
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