Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1555 |
Symbol | |
ID | 8132496 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1811972 |
End bp | 1813699 |
Gene Length | 1728 bp |
Protein Length | 575 aa |
Translation table | 11 |
GC content | 56% |
IMG OID | 644864844 |
Product | type I secretion system ATPase |
Protein accession | YP_003017134 |
Protein GI | 253687944 |
COG category | [R] General function prediction only |
COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.649141 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGAGTCAAC TATCAAATAA GGAACGTTCG TTGTTGAGTA TACTGCGTCC TTTCCGGCGC AGCTTTTGGA GCATTGGGAT TTTCAGCGCC ATCGTTAATC TACTGATGCT GTCGCCTTCT ATCTATATGC TTCAGGTTTA CGATCGCGTA CTGGCTTCGG GGAATGGTAC TACGCTGCTG ATGCTTACCC TGCTGATTGC CGGTCTGGGG GTGTTCATGG CTGCGCTCGA ATGGGTGCGC AGTCTTGTGG TCGTCAGGCT CGGGACCCGG ATCGATCTAC AGCTGAATCA ACAGGTTTTC AACGCCGCAT TTGAGCGCAA TCTGGAGGCC GGAGAGGCCA AAGCCGGTCA GGCGCTGAAC GATCTCACGC TATTGCGGCA ATTTATTACG GGCAACTCAC TGTTTGCCTT CTTCGATATC CCCTGGTTTC CCTTCTTTTT ATTGGTGCTG TTTCTGATCC ACCCGGTTCT CGGTCTGCTT GCTCTGGGGG GAACCGTGGT TCTGGTGCTG CTGGCGTGGC TGAATCAATA TCTCACCACG TCGCCTTTGG AAGAGGCAAA CCATGAAGCG CTACAGGCGA CGCATCTTGC GGATACGCAA CTGCGTAATG CGGAAGTCAT TGAATCGATG GGGATGCTGC CTAATTTACG CCGTCGCTGG CTGGGACAAC ACTACCGCTT TATTACCTTG CAAAATCTGG CAAGTGAACG GGCTGCGGTT GTCGGTGCGG CATCAAAACA CGCACGCGTT TTTCTGCAAT CGCTAATGCT CGGTGTGGGG GCTCTGCTCG CGATTAAGGG TGAAATTACG CCGGGCATGA TGATTGCGGG GTCAATCCTT GTCGGGCGCG TGCTGAGTCC TATCGATCAG CTTATTGGTA TTTGGAAACC CTTGAGCAGC GCTCGTCAGG CCTGGCATCG GCTGAGTCGT ATCATGGCAG CTTACCCGCC CAAAGCGGAG CCCATGGCGT TACCTGCGCC GGTTGGCCAG CTCAACGTCG AGAATGTGCT GTTGCAGACG CCACAAGGCG CGGCCAGGTT GCAGGATATC CATTTCTCGC TTCAGGCAGG GGAAACGCTG GCGGTTCTGG GCGCATCGGG TTCAGGAAAA TCGACACTGG CACGCCTGTT GGTGGCAACG CAAACACCAA CGCGAGGCAA AGTTCGACTG GATGGCGCCG ATCTCAGCCA GGTAGATAAA ACGGCGTTTG GTCCGGCAAT GGGCTACCTG CCGCAGGATG TGCAACTCTT TAAGGGCACG CTGGCGGAGA ACATTTCTCG CTTTGGCGAA CATGATGCGG AAAAAATTGT GGCGGCGGCG AAGCTGGCGG GTGTCCACGA AATGATTCTT AGCCAGCCAC AGGGATATGA CACGCCTCTC GGCGCCGACG GCAACGGGCT GTCGGGCGGT CAGCGGCAGC GTATCGCGCT GGCGCGGGCA GTGTATGGCG AACCCTGCTT GCTGGTACTC GATGAGCCGA ACTCCAGCCT TGATAACGAG GGTGAAATGG CTCTGGCGCA GGCGATTTCG CATCTTCAGA AACGAGGGGC AACGGTGGTA CTGATTACGC ATCGTCCAGC ATTAACTACG CTGGCGCATA AGATTTTGGT GCTTAATCAG GGTAGGCAAC AACGCTTTGG GCCTGCGCGC GAGATTCTGA GCGAACTACA GCCGCGTCGT GCCGCTAATC AGGCACAAAT GACACCCTCT ACCGCTGTCC AGCGGTAA
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Protein sequence | MSQLSNKERS LLSILRPFRR SFWSIGIFSA IVNLLMLSPS IYMLQVYDRV LASGNGTTLL MLTLLIAGLG VFMAALEWVR SLVVVRLGTR IDLQLNQQVF NAAFERNLEA GEAKAGQALN DLTLLRQFIT GNSLFAFFDI PWFPFFLLVL FLIHPVLGLL ALGGTVVLVL LAWLNQYLTT SPLEEANHEA LQATHLADTQ LRNAEVIESM GMLPNLRRRW LGQHYRFITL QNLASERAAV VGAASKHARV FLQSLMLGVG ALLAIKGEIT PGMMIAGSIL VGRVLSPIDQ LIGIWKPLSS ARQAWHRLSR IMAAYPPKAE PMALPAPVGQ LNVENVLLQT PQGAARLQDI HFSLQAGETL AVLGASGSGK STLARLLVAT QTPTRGKVRL DGADLSQVDK TAFGPAMGYL PQDVQLFKGT LAENISRFGE HDAEKIVAAA KLAGVHEMIL SQPQGYDTPL GADGNGLSGG QRQRIALARA VYGEPCLLVL DEPNSSLDNE GEMALAQAIS HLQKRGATVV LITHRPALTT LAHKILVLNQ GRQQRFGPAR EILSELQPRR AANQAQMTPS TAVQR
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