Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1420 |
Symbol | |
ID | 8132359 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1662548 |
End bp | 1664050 |
Gene Length | 1503 bp |
Protein Length | 500 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 644864710 |
Product | proline/glycine betaine transporter |
Protein accession | YP_003017002 |
Protein GI | 253687812 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG2814] Arabinose efflux permease |
TIGRFAM ID | [TIGR00883] metabolite-proton symporter |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.00160587 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATTAA AAAAGAAAAA AATTGAGCCG ATGAAAATTC AGGACATTAC CATTATTGAT AATGCCAGAC TCAAAAAAGC CATTACCGCA GCCGCATTGG GTAATGCGAT GGAATGGTTT GATTTTGGAG TATATGGTTT TGTGGCGTAT GCGCTTGGAC AGGTTTTTTT CCCCGGTGCC GACCCCGGCG TACAAATGAT TGCCGCACTG GCAACATTCT CGGTTCCCTT TTTAGTTCGG CCGCTCGGCG GAATATTCTT TGGTGCGATG GGCGATAAAT TTGGTCGCCA GAAAGTTTTG TCGATCACCA TTATTATCAT GTCGGTGAGC ACATTCTGTA TTGGCTTGAT TCCGTCTTAT GAATCGATCG GTATTTGGGC GCCGATACTA CTGCTGTTGG CGAAACTGGC GCAGGGCTTC TCCGTTGGGG GCGAATATAC CGGCGCGGCG ATTTTCGTTG CCGAATATTC CCCGGATAGA CGACGCGGAT TTTTAGGAAG CTGGCTGGAT TTCGGCTCGA TTGCCGGATT CGTGATGGGG GCGGGTGTCG TGGTGCTTAT TTCCTCCATT GTCGGAGAGG AAAGCTTTCT GGAATGGGGA TGGCGTATTC CGTTCTTTAT TGCTGCACCG CTCGGATTAA TTGGGATTTA TTTGCGCCAT GCGCTGGAAG AAACGCCGAC GTTCCAGCAG CACGTGGACA ATATTGATAA AGAATCAAAA GACAGCATTC AATCCCCGCC GAAGATTTCT CTGCGTGAAA TTGTTAGCAA GCAATGGAAA GGTCTGCTGA TCTGTATTGG GATGGTGATT ACCACCAACG TGACCTATTA CATGCTGCTG ACCTATATGC CGAGCTACCT TTCACACAGC CTGAATTACT CGGAAGATCA TGGCGTGATG ATTATTATTG CCGTCATGAT CGGGATGCTG TTTGTGCAGC CGGTGATGGG GTTGATGAGT GATCGCTATG GGCGTAAACC ATTTATTATT TGCGGCAGTA TTGGGTTGCT GCTGCTGTCA GTACCCAGCT TCATCTTGAT CAACAGCGAT GTGATCGGGC TGATTTTTTG CGGATTACTG ATGCTGGCTG TCCTGCTGAA TTCGTTTACG GGGGTGATGG CTTCGACGCT TCCCGCACTG TTCCCGACGC ATATTCGTTA TAGCGCGCTG GCGACCTCAT TTAACGTTTC TGTACTGGTT GCGGGCTTTA CGCCGACGGC GGCGGCGTGG CTGGTGGAGT CGACCAGCAA CCTGTATATG CCAGCGTATT ACCTGATGGT GATTGGGCTT ATCGGTTTGA TTACCGGGAT GTCGATGCGA GAAACGGCAA ACCAGCCGCT GAAAGGCGCA ACGCCAGCGG CGTCGGATCG GACGGAAGCC AAAGAGCTGT TGCAGGAACA GTACGACAAT ATTGAGCTGA AAATAGAAGA GATTGATGAG CAAATTGCCG AGCTGGAGAA GAAAAGAAAA CGGCTGACCG AACAGCATCC TGAGATTAAT TAA
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Protein sequence | MRLKKKKIEP MKIQDITIID NARLKKAITA AALGNAMEWF DFGVYGFVAY ALGQVFFPGA DPGVQMIAAL ATFSVPFLVR PLGGIFFGAM GDKFGRQKVL SITIIIMSVS TFCIGLIPSY ESIGIWAPIL LLLAKLAQGF SVGGEYTGAA IFVAEYSPDR RRGFLGSWLD FGSIAGFVMG AGVVVLISSI VGEESFLEWG WRIPFFIAAP LGLIGIYLRH ALEETPTFQQ HVDNIDKESK DSIQSPPKIS LREIVSKQWK GLLICIGMVI TTNVTYYMLL TYMPSYLSHS LNYSEDHGVM IIIAVMIGML FVQPVMGLMS DRYGRKPFII CGSIGLLLLS VPSFILINSD VIGLIFCGLL MLAVLLNSFT GVMASTLPAL FPTHIRYSAL ATSFNVSVLV AGFTPTAAAW LVESTSNLYM PAYYLMVIGL IGLITGMSMR ETANQPLKGA TPAASDRTEA KELLQEQYDN IELKIEEIDE QIAELEKKRK RLTEQHPEIN
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