| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1369 |
|---|
| Symbol | |
|---|
| ID | 8132308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 1597346 |
|---|
| End bp | 1598002 |
|---|
| Gene Length | 657 bp |
|---|
| Protein Length | 218 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 54% |
|---|
| IMG OID | 644864659 |
|---|
| Product | two component transcriptional regulator, LuxR family |
|---|
| Protein accession | YP_003016951 |
|---|
| Protein GI | 253687761 |
|---|
| COG category | [K] Transcription
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG2197] Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.380225 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACTTCTG ATTCACACGG CGAAACCATG ATTAATGTGG CTTTGGTTGA CGATCACATC
GTTGTACGGT CTGGCTTTGC ACAGCTTCTG GCATTAGAAA ATGACATTCA GGTAGTTGGG
CAATATGCCT CTGCGGCGCA GGCGTGGCCC CATCTCCTCA AACAGCCCAT TGATGTTGCG
GTGATTGATA TTGCCATGCC GGATGAAAGC GGCCTGTCGT TATTAACCCG CCTACGTCAA
CAGCGCCCTC AGTTTCGCGC CATTATTTTG AGCATTTACG ACACTACCGC CTTTGTACAA
AGCGCGTTGG ACGCGGGGGC TGGCGGCTAT CTCACGAAGC GCTGTGGCCC GGAAGAGCTT
GTGCAGGCGG TTCGCGTGGT CAGCAGCGGC GGCATTTACC TGTGTGCCGA TGCCTTGCAC
GCCATTCGCC ATCAGCAGCA GCCACCGAAG GAACTGCTGG CGCTGACCCC ACGCGAGCGG
GAAATATTCA GCCTGCTGAT TAACGGGATT AGTGTGAAAA GCATTGCTGA ACAGCTCGAA
CTCAGCCATA AAACCGTCCA CGTACACCGC GCCAACATTC TCAGTAAATT GCAGTGTGAA
TCTACGGTAG AGCTGGTGCA CTTTGCACTC CAGCACCAAC TGCTGGCAGG GAAATAG
|
|---|
| Protein sequence | MTSDSHGETM INVALVDDHI VVRSGFAQLL ALENDIQVVG QYASAAQAWP HLLKQPIDVA
VIDIAMPDES GLSLLTRLRQ QRPQFRAIIL SIYDTTAFVQ SALDAGAGGY LTKRCGPEEL
VQAVRVVSSG GIYLCADALH AIRHQQQPPK ELLALTPRER EIFSLLINGI SVKSIAEQLE
LSHKTVHVHR ANILSKLQCE STVELVHFAL QHQLLAGK
|
|---|
| |