Gene PC1_1249 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagPC1_1249 
SymboltolB 
ID8132184 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism namePectobacterium carotovorum subsp. carotovorum PC1 
KingdomBacteria 
Replicon accessionNC_012917 
Strand
Start bp1457186 
End bp1458478 
Gene Length1293 bp 
Protein Length430 aa 
Translation table11 
GC content53% 
IMG OID644864537 
Producttranslocation protein TolB 
Protein accessionYP_003016833 
Protein GI253687643 
COG category[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG0823] Periplasmic component of the Tol biopolymer transport system 
TIGRFAM ID[TIGR02800] tol-pal system beta propeller repeat protein TolB 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000163249 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCATG TACTGAAAGT TGCAGTAAGC TTTTTAATGC TGTGGGCAGC GGTGCTGCAC 
GCGGAAGTAC GTATAGAGAT TACCCAAGGG GTAGACTCTG CGCGCCCTAT TGGTGTAGTT
CCGTTCAAAT GGGCGGGGCC GGGCGCTGCG CCTGAAGACG TAGGCGGCAT CGTGGGTGCT
GATTTACGTA ATAGCGGTAA ATTTAATCCG ATCGATGCAA ACCGCATGCC GCAGCAGCCT
GCTACAGCAT CTGAGGTTAC CCCTGCTGCA TGGACTGCGC TGGGCATTGA TGCGGTTGTG
GTTGGTCAGG TTCAACCGAG TGCCGATGGC AGCTATCTGG TTTCCTATCA GCTTGTCGAT
ACCTCGGGTA ACCCAGGTAA CGTTCTGGCT CAGAACCAGT TCAAAGTCAC CAAGCAATGG
TTGCGTTATG CTGCGCACAC GGCAAGTGAT GAAGTGTTTG AGAAGCTGAG CGGCATCAAA
GGTGCATTCC GTACCCGTAT CGCTTACGTT GTTCAGACCA ACGGCGGTCA GTTCCCTTAT
GAACTGCGCG TTGCAGACTA TGACGGTTAC AACCAGTTTG TTGTTCACCG TTCACCACAG
CCGCTGATGT CTCCGGCTTG GTCTGCTGAC GGTAGCAAAC TCGCTTATGT AACGTTTGAA
AGTGGCCGGT CTGCACTGGT TATCCAGACG CTGGCAAATG GTGCAATCCG TCAGGTTGCT
TCCTTCCCAC GTCACAACGG TGCGCCTTCT TTCTCTCCTG ATGGCAGCAA ACTGGCATTC
GCGCTCTCCA AGAGCGGTAG CCTGAACCTG TATGTAATGA ATCTGGCATC CGGGCAAATC
AGTCAGGTGA CCGATGGGCG CAGCAATAAC ACGGAGCCAA CTTGGTTCCC AGACAGCCAG
ACCTTGGCCT ATACTTCAGA CCAGGCTGGT CGTCCTCAGG TTTACAAAGT TAATGCTAAC
GGCGGTGCAC CACAGCGTCT GACCTGGGAA GGTGCCCAGA ATCAGGATGC TGATGTGAGC
GCCGACGGGA AATTTTTGGT AACGGTTGGC TCTAATGGTG GAGCTCAGCA TATTTCCAAA
CTGGATCTGG TAACGGGTGC CGTACAAGTA TTAACGGACA CGTTCCTGGA CGAAACGCCA
AGTATCGCAC CGAATGGCAC GATGGTGATC TACAGCTCTA AACAAGGACT GGGGTCAGTG
CTACAGCTGG TTTCGACAGA TGGACGTTTC AAAGCGCGTC TTCCGGCTAC TGATGGACAG
GTTAAATTCC CTGCCTGGTC GCCGTATCTA TAA
 
Protein sequence
MKHVLKVAVS FLMLWAAVLH AEVRIEITQG VDSARPIGVV PFKWAGPGAA PEDVGGIVGA 
DLRNSGKFNP IDANRMPQQP ATASEVTPAA WTALGIDAVV VGQVQPSADG SYLVSYQLVD
TSGNPGNVLA QNQFKVTKQW LRYAAHTASD EVFEKLSGIK GAFRTRIAYV VQTNGGQFPY
ELRVADYDGY NQFVVHRSPQ PLMSPAWSAD GSKLAYVTFE SGRSALVIQT LANGAIRQVA
SFPRHNGAPS FSPDGSKLAF ALSKSGSLNL YVMNLASGQI SQVTDGRSNN TEPTWFPDSQ
TLAYTSDQAG RPQVYKVNAN GGAPQRLTWE GAQNQDADVS ADGKFLVTVG SNGGAQHISK
LDLVTGAVQV LTDTFLDETP SIAPNGTMVI YSSKQGLGSV LQLVSTDGRF KARLPATDGQ
VKFPAWSPYL