| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1234 |
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| Symbol | sdhA |
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| ID | 8132169 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 1439828 |
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| End bp | 1441594 |
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| Gene Length | 1767 bp |
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| Protein Length | 588 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644864522 |
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| Product | succinate dehydrogenase flavoprotein subunit |
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| Protein accession | YP_003016818 |
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| Protein GI | 253687628 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG1053] Succinate dehydrogenase/fumarate reductase, flavoprotein subunit |
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| TIGRFAM ID | [TIGR01812] succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup
[TIGR01816] succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATTTGC CAGTCAGAGA ATTTGATGCA GTTGTTGTTG GCGCAGGTGG CGCAGGTATG
CGCGCCGCGC TGCAAATCTC CCAAATGGGC CTGTCCTGTG CCCTGTTATC GAAAGTCTTC
CCAACCCGTT CCCATACTGT CTCTGCGCAG GGCGGTATTA CCGTTGCGCT GGGTAACACC
CATGAAGATA ACTGGGAATG GCACATGTAT GACACCGTAA AAGGGTCGGA TTACATTGGC
GATCAGGACG CAATTGAATA TATGTGTAAA ACCGGACCGG AAGCGATTCT GGAGCTGGAA
CACATGGGAT TACCGTTCTC CCGTCTGGAT GATGGCAGCA TTTATCAGCG TCCGTTCGGT
GGTCAATCCA AGAACTTTGG CGGCGAGCAG GCCGCACGTA CGGCGGCTGC CGCTGACCGT
ACCGGTCATG CGCTGTTGCA TACGCTGTAT CAGCAGAACC TGAAAAATCA TACGACCATT
TTCTCCGAAT GGTACGCCCT CGATCTGGTG AAGAACCAGG ATGGCGCGGT AGTCGGCTGT
ACGGCGATCT GTATCGAAAC AGGTGAAGTC GTTTATTTCA AAGCGAAAGC GACCGTACTG
GCAACGGGCG GTGCGGGCCG TATCTATCAA TCCACGACCA ACGCACACAT TAATACAGGT
GACGGCGTAG GCATGGCATT GCGTGCCGGT GTTCCGTTGC AGGATATGGA AATGTGGCAG
TTCCACCCAA CCGGTATCGC TGGTGCGGGT GTGCTGGTGA CCGAAGGCTG CCGTGGTGAA
GGCGGCTACC TGCTGAACAA GCACGGTGAA CGTTTCATGG AGCGCTACGC GCCGAACGCG
AAAGATCTGG CGGGCCGTGA CGTTGTTGCG CGTTCCATCA TGATCGAAAT TCGTGAAGGC
CGCGGCTGTG AAGGTCCGTG GGGGCCTCAT GCCAAGCTGA AGCTGGATCA TCTGGGTAAA
GACGTTCTGG AATCCCGTCT GCCGGGTATT TTGGAACTGT CCCGTACGTT TGCGCACGTC
GATCCGGTGA AAGAGCCGAT TCCAGTTATC CCAACCTGCC ACTATATGAT GGGCGGTATT
CCGACCAAAG TGAGCGGTCA GGCGTTGACG GTGAATGAGA AAGGCGAAGA CGTGGTGATT
CCAGGGCTGT TCGCCGTGGG TGAAATTGCC TGCGTATCGG TGCATGGTGC CAACCGTCTG
GGCGGTAACT CGCTGCTCGA TCTGGTGGTA TTCGGTCGTT CGGCGGGTAT TCACCTGCAA
GAGTCTCTGG AAGAGCAGGG CACTAGCCGT GATGCCAGCG ATTCCGATAT TGAAGCATCG
CTTGATCGTC TGAACCGCTG GAACAATACC CGCTCAGGGG AAGATCCGGT TGAAATTCGT
AAGGCGCTGC AATCCTGTAT GCAGAATAAC TTCTCGGTCT TCCGCGAAGG TGATGCGATG
GCGAAAGGGT TGGAAGAGCT GAAAGTTATC CGCGAACGCC TGAAAAATGC GCGTCTGGAT
GACACCTCAA GCGAGTTCAA CACCCAGCGT ATCGAGTGCC TGGAGCTGGA TAACCTGATG
GAAACCGCCT ATGCGACAGC GGTATCCGCC AACTTCCGTA CCGAAAGCCG TGGCGCACAT
AGCCGCTTCG ACTACCCTGA GCGTGACGAT GAGAATTGGC TGTGCCATTC GTTGTATCTG
CCGCAAACCG ACAGCATGAC GCGCCGCGAG GTGAACATGC AGCCTAAACT GCGTCCGGCG
TTCCCGCCGA AAGTACGTAC TTATTAA
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| Protein sequence | MNLPVREFDA VVVGAGGAGM RAALQISQMG LSCALLSKVF PTRSHTVSAQ GGITVALGNT
HEDNWEWHMY DTVKGSDYIG DQDAIEYMCK TGPEAILELE HMGLPFSRLD DGSIYQRPFG
GQSKNFGGEQ AARTAAAADR TGHALLHTLY QQNLKNHTTI FSEWYALDLV KNQDGAVVGC
TAICIETGEV VYFKAKATVL ATGGAGRIYQ STTNAHINTG DGVGMALRAG VPLQDMEMWQ
FHPTGIAGAG VLVTEGCRGE GGYLLNKHGE RFMERYAPNA KDLAGRDVVA RSIMIEIREG
RGCEGPWGPH AKLKLDHLGK DVLESRLPGI LELSRTFAHV DPVKEPIPVI PTCHYMMGGI
PTKVSGQALT VNEKGEDVVI PGLFAVGEIA CVSVHGANRL GGNSLLDLVV FGRSAGIHLQ
ESLEEQGTSR DASDSDIEAS LDRLNRWNNT RSGEDPVEIR KALQSCMQNN FSVFREGDAM
AKGLEELKVI RERLKNARLD DTSSEFNTQR IECLELDNLM ETAYATAVSA NFRTESRGAH
SRFDYPERDD ENWLCHSLYL PQTDSMTRRE VNMQPKLRPA FPPKVRTY
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