| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_1215 |
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| Symbol | |
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| ID | 8132150 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 1417687 |
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| End bp | 1420434 |
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| Gene Length | 2748 bp |
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| Protein Length | 915 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644864503 |
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| Product | sensor protein KdpD |
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| Protein accession | YP_003016799 |
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| Protein GI | 253687609 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2205] Osmosensitive K+ channel histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.693772 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATTGACG GTGAAGATCG TCGCCCGGAT CCCGATAGCC TGCTGGCTCA GGTCGGTGCG
CCACCGCGCG GCAAGCTGAA GATCTTTTTT GGCGCCTGCG CGGGCGTCGG GAAAACGTAT
GCCATGTTGC AGGAAGCCCA GCGGCTGCGT GCTCAGGGGT TGGATATTCT TGTCGGCGTA
GTAGAAACCC ACGGCCGCAG CGAAACGGCT GCGTTGCTGG AGGGTTTACC GCTGCTGCCG
CTCAAGCATT TGCGTCACCA CGGTCGCCAT ACGGTCGAAT TCGATCTGGA TGCGGCGCTG
GCACGCTGCC CGGCGCTGAT TCTGATCGAC GAGCTGGCGC ACAGCAACGT AAGTGGATCG
CGCCACCCCA AGCGCTGGCA GGACGTGCAG GAACTGCTTG ATGCCGGTAT CGACGTCTTT
ACGACGGTGA ACGTTCAGCA TCTGGAAAGC CTGAATGATG TAGTCGGTGG CGTCACGGGG
ATTCGCGTGC GGGAAACCGT GCCAGACCCG ATATTCGATC AGGCCAGCGA AGTCATTTTG
GTGGATCTTC CACCGGACGA TCTGCGGCAA CGTCTGAACG AAGGCAAAGT GTACCTGCCG
CTACAGGCCG AACGTGCCGT CGAGAACTTT TTCCGCAAAG GCAATTTGAT CGCCCTGCGC
GAGCTGGCGC TGCGACGCAT GGCAGATCGG GTTGACGATC AAATGCGTGC CATGCGTGCC
GGACAAGGAC GCGAACAGGT CTGGCATACG CGCGATGCCA TTCTGTTATG CATCGGCCAC
GGCACGGGTA ATGAAAAGCT GGTGCGAACG GCGGCACGTC TGGCAGCGCG GTTAGGCAGC
GCCTGGCACG CCGTTTACGT CGAAACCCCG CGTCTTCACC GCTTGCCTGA ACCGCAACGG
CGCGCCATCC TACGGGCGCT CAAGCTGGCG CAGGATTTAG GGGCAGAAAC GGTTACGCTG
TCTGAACCCG ACGAAGAACT TGCCGTCCTG CGCTATGCGC GTGAGCACAA CCTCGGCAAG
ATCGTCATTG GCCGCCATGT GGAGCAGCGC TTCGGCTGGT GGTGGCGCAC TCGCTTTGCC
GAACGGCTCG GCAGACTGGG GCCAGATCTC GATCTGGTCG TGGTGGCCGT GCAGGATGAT
GTTCCTGCCA CGCCGATAAA AACGCCTGAT GCGCGCGGTC TGGTAGAAAA ATGGCGTATG
CAGCTGTTTG GCTGCGGGCT CGCCACGCTG CTGTGCGCCT TGATCACCCT GCTTGCCTCA
TGGTCGCCGT TTGCCATGCT GGAACCGGTC AATCTGGTGA TGATTTATCT GCTGGCTGTG
GTCATTGTCG CGCTCTTCTT TGGTCGCTGG CCGTCGGTGT TCGCCGCCAT CATCAATGTC
GCCAGTTTCG ATCTCTTCTT CATTCTGCCG CGTGGCACCT TTGCCGTGTC GGATGCACAA
TATCTGGTCA CCTTCGCCGT GATGCTTGGC GTCGGCCTGC TGGTCGGTAA TCTGACCGCA
GGCGTGCGTT ATCAGGCCAG AGTTGCGCGT TATCGCGAGC AGCGCGTCCG CCACCTGTAT
GAGATGTCCA AGGCGCTGAA CCGTAGCCTG TCCAGCGCCG ATATTGTCGA GGCCAGCCAG
CATTTTCTCA GCACGACATT TCAGGCCAGG ATCGCGGTTC TGCTCGCCGA TAGCCTGCAT
CATACCTCGC CTGAACTCGC ACAACCTGCG CGAGACAGTC AGCAATTGAT TGTCGATCAC
GCCATCGTCC GCTGGAGCTT CGATCATCGC GCGCCTGCCG GAGCGGGAAC AACCACCCTG
CCCGGCGTGT CGTATCAGAT CCTGCCGCTC GCCACCACGC AGCAAATCTT CGGCGTGTTA
GCAATCGAAC CTAACAATGC CCGCCAGCTG ATGATCCCCG AACAGCAGCG GCTACTGGAA
ACCTTTACCG TGCTGATCGC CAATGCGCTC GAGCGTCTGC ACCTGATGCA AAGTACGGAA
AATGCCCGGC TGGATGCCGA TCGTGAACAG TTGCGTAACT CGCTGCTCGC CGCGCTCTCA
CACGATCTCC GCACGCCACT GACCGTACTT TTTGGTCAGG CCGAGATTCT GACACTGAAT
CTGGCGAGCG AAGGGTCGCC TTATGCTCAG CAGGCCAACC AGATCCGCCA GCATATTTTA
AACACCACGC GGCTGGTGAA TAATTTGCTC GATATGGCGC GTATTCAGTC GGATGGCTTT
AACCTGCGCA AAGAGTGGCA AACGCCGGAG GAGCTCATCG GCAGCGCCCT ACAACAGTTG
GAAAGCGCGC TGGCGAAAAA CACCATTCAG GTTAATCTAC CTGATGAGAT GGTTCTGGTT
TATTGTGATG CGGGGCTGGT GGAACGCGTG TTCATTAACC TGCTGGAGAA TGCGCTAAAA
TACGCTGGCG AGCAGGCCAC GATAGCCATT TCAGCAAGCG TTATTGCAGA GAGCACGGCG
TCGCAGCCCG ATGATCAGGA AAGCGCGCTG GAAATTATTG TGCAGGACAA TGGCCCGGGG
ATTGAGCACG GTCAGGAAAG TATGATTTTT GATAAATTCT CCCGAGGCCA CAAAGAGTCA
TCCATTCCCG GTGTGGGGCT GGGGCTGGCA ATCTGCCGGG CAATTGTGGA AATTCACGGT
GGCCGTATCT GGGCAACGAA TGCAAAAAGC GGCGGCGCGG CTTTCCATTT CACGCTTCCG
CTGTCGACAC CACCAGACCT CGAACCGGAA GATATTGAGG AGCACTGA
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| Protein sequence | MIDGEDRRPD PDSLLAQVGA PPRGKLKIFF GACAGVGKTY AMLQEAQRLR AQGLDILVGV
VETHGRSETA ALLEGLPLLP LKHLRHHGRH TVEFDLDAAL ARCPALILID ELAHSNVSGS
RHPKRWQDVQ ELLDAGIDVF TTVNVQHLES LNDVVGGVTG IRVRETVPDP IFDQASEVIL
VDLPPDDLRQ RLNEGKVYLP LQAERAVENF FRKGNLIALR ELALRRMADR VDDQMRAMRA
GQGREQVWHT RDAILLCIGH GTGNEKLVRT AARLAARLGS AWHAVYVETP RLHRLPEPQR
RAILRALKLA QDLGAETVTL SEPDEELAVL RYAREHNLGK IVIGRHVEQR FGWWWRTRFA
ERLGRLGPDL DLVVVAVQDD VPATPIKTPD ARGLVEKWRM QLFGCGLATL LCALITLLAS
WSPFAMLEPV NLVMIYLLAV VIVALFFGRW PSVFAAIINV ASFDLFFILP RGTFAVSDAQ
YLVTFAVMLG VGLLVGNLTA GVRYQARVAR YREQRVRHLY EMSKALNRSL SSADIVEASQ
HFLSTTFQAR IAVLLADSLH HTSPELAQPA RDSQQLIVDH AIVRWSFDHR APAGAGTTTL
PGVSYQILPL ATTQQIFGVL AIEPNNARQL MIPEQQRLLE TFTVLIANAL ERLHLMQSTE
NARLDADREQ LRNSLLAALS HDLRTPLTVL FGQAEILTLN LASEGSPYAQ QANQIRQHIL
NTTRLVNNLL DMARIQSDGF NLRKEWQTPE ELIGSALQQL ESALAKNTIQ VNLPDEMVLV
YCDAGLVERV FINLLENALK YAGEQATIAI SASVIAESTA SQPDDQESAL EIIVQDNGPG
IEHGQESMIF DKFSRGHKES SIPGVGLGLA ICRAIVEIHG GRIWATNAKS GGAAFHFTLP
LSTPPDLEPE DIEEH
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