Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1179 |
Symbol | |
ID | 8132108 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1375714 |
End bp | 1376841 |
Gene Length | 1128 bp |
Protein Length | 375 aa |
Translation table | 11 |
GC content | 59% |
IMG OID | 644864461 |
Product | rare lipoprotein A |
Protein accession | YP_003016763 |
Protein GI | 253687573 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0797] Lipoproteins |
TIGRFAM ID | [TIGR00413] rare lipoprotein A |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.00815633 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCGTAAGG ATTGGCTTTG GATCGGCGTA GCAACTCTGG CGCTTGCTGC CTGTACCACC ACGGAACAGC GGCAGCCTGC TCCACCAGTA ACTCAGGTTT ATAGCGGCCC CGTCGAGGAA ATCGGCGGTG CGGAACCGCG TTACGAACCC TACAATCAGG GGACGCTGCA GGACTACAGC ATCAAAGGCA AGAGCTATAA AATTGTCAAA GATCCACAAA ACTTTAGTGA GACTGGCTTA GCCGCCTGGT ACGGCGAAGA AGCCAGCGGT AACCGCACGT CAATCGGCGA AACGTTTGAT CCTAACGCGA TCACCGCAGC CCACCCAACG CTGCCGCTAC CAAGCTATGT TCGCGTCACC AACCTGAGTA ACGGTCGCCG TCTGGTTGTG CGCGTGAATG ACCGCGGGCC GTATACGCCG GGCAGAATTA TCGATCTGTC GAAGGCTGCA GGCGATCGGC TGAATATCTC GAACAATACC AAAGTAAAAG TAGACTTCAT CAACGTCGCG CCAGATGGCA CGCTCTCCGG TCCCGGAACC GTGGGCACCA CCGTCGCCAA ACAAAGCTTC GCTCTGCCAG AACGCCCAAG CTTCGGTGCC AGCGGGCTGG GAACGCCAAT GATGGAAAGC ACATCACCAA CGCCCAACAG CGCCGTTCAC CCAATCAGCA ATAGCAGCCT GAGTGCCCCT ACAGAAAACA CGCAACCGCA GAGCAGCGCA CCATCGCACA GCGGTGGTTT TCTGGGAGCC CCTTCTGCCC TGCGCGCTGG CGTAGTTGAG TCCAACGTGG CGCCAACGGC AACATCGTCC CCATCTGCCG CACCACTGAA CGTCGCACCA GCCGCGTCAG CTGCAGCGGT TGCCGCTCCC TCGGCGGTAT CCTCCTCCGC CACGGGTCGC TATGTGGTAC AGGTCGGGGC GCTGAGCGAT CAGCAACGCG CGCAAACCTG GCAGCGCAGC CTGAGCGAAC GCTTCCGCGT AGCCGGTAAA GTCACGGCGA GCGGCGGGCT GTACCGTATC CAGCTAGGGC CATTCCAGAA TCGTCAGCAA GCCGCTGAAC TTCAACAACG TTTGTCAGTC GAAGCTCAGC AGCAGTCGTT TATTACCGCC GCACCCGGCA CCCTCTAG
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Protein sequence | MRKDWLWIGV ATLALAACTT TEQRQPAPPV TQVYSGPVEE IGGAEPRYEP YNQGTLQDYS IKGKSYKIVK DPQNFSETGL AAWYGEEASG NRTSIGETFD PNAITAAHPT LPLPSYVRVT NLSNGRRLVV RVNDRGPYTP GRIIDLSKAA GDRLNISNNT KVKVDFINVA PDGTLSGPGT VGTTVAKQSF ALPERPSFGA SGLGTPMMES TSPTPNSAVH PISNSSLSAP TENTQPQSSA PSHSGGFLGA PSALRAGVVE SNVAPTATSS PSAAPLNVAP AASAAAVAAP SAVSSSATGR YVVQVGALSD QQRAQTWQRS LSERFRVAGK VTASGGLYRI QLGPFQNRQQ AAELQQRLSV EAQQQSFITA APGTL
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