Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1121 |
Symbol | |
ID | 8132050 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1312565 |
End bp | 1313335 |
Gene Length | 771 bp |
Protein Length | 256 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 644864403 |
Product | short chain dehydrogenase |
Protein accession | YP_003016705 |
Protein GI | 253687515 |
COG category | [R] General function prediction only |
COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.0921359 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAAAA CGGTCTTCAT TACGGGTTGT TCCAGCGGTA TTGGCCTGAT TGCCGCTCAG GATCTGCAAA AGCGCGGCTA TCGCGTGATT GCGGCCTGCC GTCGCGCAGA GGATGTTGCG CGCCTGAACG CGTTAGGTCT GGAAGCGATT ACGCTCGATC TGGATGACAG CGCCAGCGTT GAACAAGCCG CCGCAGAGGT GATCAGACTG ACCGATAACC GCCTGTACGG GTTGTTTAAT AACGCCGGAT ACGGTCTGTA TGGCCCGCTG AATACCATTT CGCGCCAGCA GCTCGAACAG CAGTTTTCCA GCAACCTGTT CGGCACGCAT CAGCTCACGC AATTACTGCT GCCCGCCATG CTGCCGCACG GCGAAGGCCG TATCATCCAG ACCAGTTCGG TGTTAGGGCT GGTGTCAACG CCGGGGCGCG GCGCGTATGC CGCCAGCAAA TATGCGTTGG AAGCGTGGTC AGATGCGCTG CGCATGGAGT TACACGGCAG CGGCCTGCAC GTCAGCCTGA TCGAGCCCGG CCCAATTAGC ACACGCTTTA CTCATAACGT GGCTCAAACG CAGACGGACA AGCCGGTGAC CAACCCCGGC ATCGCTAAGC GTTTCACTCT ACCGCCGGAA GCGATATTGC CGAAGCTCCA TCATGCGCTG GAAAGTTCGC GGCCTAAATT ACGCTATCCC GTCACGCTGG TGGCTCACGC CTTAACCTGG CTGCGCCGCC TGCTACCGGG GTGTTTGCTG GATAAAGTAT TACGAGGATA A
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Protein sequence | MQKTVFITGC SSGIGLIAAQ DLQKRGYRVI AACRRAEDVA RLNALGLEAI TLDLDDSASV EQAAAEVIRL TDNRLYGLFN NAGYGLYGPL NTISRQQLEQ QFSSNLFGTH QLTQLLLPAM LPHGEGRIIQ TSSVLGLVST PGRGAYAASK YALEAWSDAL RMELHGSGLH VSLIEPGPIS TRFTHNVAQT QTDKPVTNPG IAKRFTLPPE AILPKLHHAL ESSRPKLRYP VTLVAHALTW LRRLLPGCLL DKVLRG
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