Gene PC1_1021 details

Gene Information

• Locus tag: PC1_1021
• Symbol: secD
• ID: 8131950
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 1192625
• End bp: 1194439
• Gene Length: 1815 bp
• Protein Length: 604 aa
• Translation table: 11
• GC content: 53%
• IMG OID: 644864304
• Product: preprotein translocase subunit SecD
• Protein accession: YP_003016606
• Protein GI: 253687416
• COG category: [U] Intracellular trafficking, secretion, and vesicular transport
• COG ID: [COG0342] Preprotein translocase subunit SecD
• TIGRFAM ID: [TIGR00916] protein-export membrane protein, SecD/SecF family; [TIGR01129] protein-export membrane protein SecD

Plasmid Coverage information

• Num covering plasmid clones: 15
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGCTGGTCG TGGTGTTATT CGTCGGCCTG CTCTACGCAC TTCCTAACCT ATATGGTGAG 
GATCCGGCGG TACAAGTTAC TGGCGCGCGG GGAACCGCCG CCAGCGAAAC GACGCTGATC 
CAAGTCCAGA ATGTCTTAAA AGAACAAAAC ATTACCAGTA AGTCGATTGC ATTGGAAAAT 
GGTGCAATTC TGGCTCGCTT CTCTAACCCT GATATTCAGC TCCGCGCGCG TGAAGCGCTC 
GTTAATGAGC TGGGCGAAAA ATTCGTCGTT GCACTTAACC TGGCTCCTGC TACGCCAAAT 
TGGCTGCGGT TGTTAGGCGC TGAACCGATG AAATTGGGGC TCGACCTGCG CGGCGGCGTT 
CACTTCCTGA TGGAAGTGGA TATGGATACG GCGCTGGGTA AACTGCAAGA ACAAACCATG 
GACTCTTTGC GCAGCGATCT GCGTGAGAAG AACATCCCTT ATGCCTCCGT GCGTAAAATT 
GATAATTACG GCGTCGAAAT TCGTTTCCGT GATGCTCAAA CGCGTGATGA CGGTATCAAC 
TATCTGACGT CCCGTCATCG CAATCTGGTT CTCAGCAGCA GCGGCAGCAA CCTGCTACGC 
GCGGTGATGT CTGACGAACG TCTGCGTGAA GCACGTGAAT ACGCCGTACA GCAGAACATC 
AATATCCTGC GTAACCGTGT GAACCAACTG GGCGTTGCCG AACCACTGGT ACAGCGTCAG 
GGTGCCGATC GTATCGTTGT TGAGTTACCG GGTATTCAGG ACACGGCGCG CGCGAAAGAA 
ATTCTTGGTG CCACCGCTAC GCTGGAATTC CGTCTGGTCA ACAGTAATGC TGATGCGACC 
GCAGCGGCGA ACGGCCGCGT GCCGGGCGAT TCCGAAGTGA AGAACATGCG TGATGGTTCA 
CCCGTTGTGT TGTTCAAACG CGTCATTCTG ACGGGCGACC ACATCACTGA CTCAACATCA 
AGCAATGACG AATACAACCG TCCCCAAGTG AATATTTCTC TGGACAGTGC TGGTGGTAAC 
ACCATGTCCA ACTTCACTAA AGACAGTATC GGCAAGCTGA TGGCGACGCT GTTCGTGGAA 
TACAAAGACA GCGGTAAGAA AGATGCAACG GGCCGTTCGA TACTGGAAAA ACACGAAGAA 
GTGATCAACG TAGCGACGAT TCAGTCGCGA CTGGGTAACA GCTTCCGTAT TACCGGTATT 
GATAATCCGA ACGAAGCGCG TCAACTGTCT CTGCTGCTGC GTGCGGGTGC GCTGATTGCG 
CCGATTCAGA TTGTGGAAGA ACGTACCATT GGGCCAACGC TGGGGATGCA AAACATCACT 
CAGGGGCTGG AGGCCTGCTT GTGGGGCTTG ATCGCATCGA TCCTCTTCAT GGTCTTCTTC 
TATAAGAAGT TTGGCGTCAT CGCGACCAGT GCATTGGTTG CTAACCTGGT ATTGATTGTC 
GGCGTGATGT CGCTGCTGCC AGGCGCGACG CTAACCATGC CGGGTATCGC GGGTATCGTG 
CTTACACTGG CGGTCGCCGT GGATGCTAAC GTACTCATTA ACGAACGTAT CAAGGAAGAA 
CTCAGTAATG GTCGCTCCGT GCAGCAGGCT ATTCATGAGG GCTACAAAGG GGCATTCAGC 
TCCATTGTTG ATGCGAACGT CACGACGTTG ATTAAAGTCA TCATCCTGTA TGCGGTTGGT 
ACCGGTTCTA TCAAAGGGTT TGCTATCACC ACTGCGATTG GGATTGCGAC CTCAATGTTT 
ACGGCGATCG TCGGTACTCG TGCCATCGTT AACCTGCTTT ACGGCGGTAA ACGCATCAAC 
AAGCTGTCTA TCTGA 

 

Protein sequence

MLVVVLFVGL LYALPNLYGE DPAVQVTGAR GTAASETTLI QVQNVLKEQN ITSKSIALEN 
GAILARFSNP DIQLRAREAL VNELGEKFVV ALNLAPATPN WLRLLGAEPM KLGLDLRGGV 
HFLMEVDMDT ALGKLQEQTM DSLRSDLREK NIPYASVRKI DNYGVEIRFR DAQTRDDGIN 
YLTSRHRNLV LSSSGSNLLR AVMSDERLRE AREYAVQQNI NILRNRVNQL GVAEPLVQRQ 
GADRIVVELP GIQDTARAKE ILGATATLEF RLVNSNADAT AAANGRVPGD SEVKNMRDGS 
PVVLFKRVIL TGDHITDSTS SNDEYNRPQV NISLDSAGGN TMSNFTKDSI GKLMATLFVE 
YKDSGKKDAT GRSILEKHEE VINVATIQSR LGNSFRITGI DNPNEARQLS LLLRAGALIA 
PIQIVEERTI GPTLGMQNIT QGLEACLWGL IASILFMVFF YKKFGVIATS ALVANLVLIV 
GVMSLLPGAT LTMPGIAGIV LTLAVAVDAN VLINERIKEE LSNGRSVQQA IHEGYKGAFS 
SIVDANVTTL IKVIILYAVG TGSIKGFAIT TAIGIATSMF TAIVGTRAIV NLLYGGKRIN 
KLSI