Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1012 |
Symbol | |
ID | 8131941 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 1183530 |
End bp | 1184849 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644864295 |
Product | branched-chain amino acid transport system II carrier protein |
Protein accession | YP_003016597 |
Protein GI | 253687407 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG1114] Branched-chain amino acid permeases |
TIGRFAM ID | [TIGR00796] branched-chain amino acid uptake carrier |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTCATC GTTTAACGTC TAAAGATATT GTGGCACTAG GTTTTATGAC CTTTGCTTTA TTCGTGGGGG CTGGAAATAT TATTTTCCCG CCTATGGTGG GATTACAGTC GGGAGAGCAC GTTTGGACGG CGGCGATCGG CTTCCTGCTG ACCGCGGTTG GTCTACCGGT GTTGACCGTG ATTGCTCTGG CTCGGGTTGG CGGTGGCGTA GATGCGCTCA GCTCGCCGAT TGGTAAAAAA GCGGGCGTGG TTCTGGCCAC GGTGTGCTAT CTGGCCGTTG GGCCACTATT CGCTACGCCG CGTACGGCAA CCGTGTCGTT TGAAGTCGGC CTGGCTCCTC TGGTCGGCAA CGGAGCGTCT CCGCTGCTGA TTTATAGCCT GATTTACTTT GCCATTGTTA TCGCAATTTC TCTGTATCCG GGCAAACTGC TGGATACAGT TGGTCATGTG CTCGCGCCGC TGAAGATCAT TGCGCTGGCG GTATTGGGTA TTGCTGCGGT GCTGTGGCCT GCGGGTACGC CAATTCCCGC GACGGAAGCG TATGAGCAAC TGCCGTTCTC CAATGGCTTC GTCAACGGCT ATCTGACGAT GGATACGCTG GGCGCGATGG TCTTTGGTAT CGTGATCGTC AATGCGGCGC GCTCACGTGG GGTGTCAAGC CCTATGCTGC TGACGCGTTA CACGATGTGG GCGGGTTTGA TTGCCGGTAT TGGCCTGACT CTCGTCTATT TGAGCTTGTT CCAGCTTGGT TCCGTCAGCG GCGAACTGGT GCCACAGGCG CAGAACGGTG CTGAAATTCT CCATGCCTAT GTACAACACT CGTTTGGCAA TATGGGGAGC AGCTTCCTGG CGTTGTTAAT CTTTATCGCC TGTCTGGTGA CGGCGGTGGG GCTAACCTGT GCCTGCGCTG AATTCTTTGC GCAATACCTG CCGTTGTCTT ACCGCACGCT GGTGTTTGTG CTGGGCATCT TCTCAATGGT GGTGTCGAAC CTGGGTCTTA GCCATCTGAT CCAACTTTCT ATTCCTGTAC TGACAGCGAT TTATCCGCCA TGTATCATTC TGGTTTTATT GAGCTTTACG CTGCGCTGGT GGAATAGCGC TTCACGTATT GTGGCGCCCG TCATGCTCGT TAGTCTGTTA TTTGGCATGA TTGATGGTAT AAAATCGTCG GCTTTCAAAT CGCTGTTGCC AGAGTGGAGC CTCAACCTGC CGCTGAGTGA GCAAGGGTTG GCATGGTTGC CACCGTCACT GCTGATTTTG CTGGTCGCGG TGATTTACGA CAGAGTGTGT GGTCGTCAGG AAGTTACGGT ACATCAATAA
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Protein sequence | MSHRLTSKDI VALGFMTFAL FVGAGNIIFP PMVGLQSGEH VWTAAIGFLL TAVGLPVLTV IALARVGGGV DALSSPIGKK AGVVLATVCY LAVGPLFATP RTATVSFEVG LAPLVGNGAS PLLIYSLIYF AIVIAISLYP GKLLDTVGHV LAPLKIIALA VLGIAAVLWP AGTPIPATEA YEQLPFSNGF VNGYLTMDTL GAMVFGIVIV NAARSRGVSS PMLLTRYTMW AGLIAGIGLT LVYLSLFQLG SVSGELVPQA QNGAEILHAY VQHSFGNMGS SFLALLIFIA CLVTAVGLTC ACAEFFAQYL PLSYRTLVFV LGIFSMVVSN LGLSHLIQLS IPVLTAIYPP CIILVLLSFT LRWWNSASRI VAPVMLVSLL FGMIDGIKSS AFKSLLPEWS LNLPLSEQGL AWLPPSLLIL LVAVIYDRVC GRQEVTVHQ
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