Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_1006 |
Symbol | |
ID | 8131935 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1173525 |
End bp | 1177208 |
Gene Length | 3684 bp |
Protein Length | 1227 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644864289 |
Product | SMC domain protein |
Protein accession | YP_003016591 |
Protein GI | 253687401 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0419] ATPase involved in DNA repair |
TIGRFAM ID | [TIGR00618] exonuclease SbcC |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.817412 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGAAAATCC TCAGTCTGCG CTTAAAGAAC CTCAACGCGC TGAAAGGCGA ATGGAAGATC GACTTCACGC AGGAGCCCTT TTCCAGCAAC GGCTTATTTG CGATTACCGG CCCCACCGGC GCGGGAAAAA CCACGCTGCT GGATGCCATA TGTCTGGCGC TTTACCACGA AACACCGCGA TTGGGTCAGC TTTCTGAAAA GCATAATGAC CTGATGACGC ACAACACCTC CGAATGTCTT GCAGAAGTTG AATTCGAAGT GAAAGGCGTC GGATACCGCG CCTTCTGGAG CCAACGTCGG GCTAGGAACT CACCGGATGG TAATTTACAG ACACCAAAGG CCGAACTCGC CCTCATTGAA GGCGGTAGAA TTCTGTGTGA AAAAATCACC GATAAAAAAA ATAGAGTAGA ACAAATCACC GGACTGGATT TTGGCCGTTT TACACGATCC ATGATGTTGT CGCAGGGGCA ATTTGCTGCG TTTCTCAACG CACAACCCAA AGACAGAGCG GACCTACTGG AAGAGCTGAC CGGCACAGAT ATTTACGGAC TGATCTCCGA ACGCGTCTAT GACAAGCACA GGCAGGCGCT CGAAGCACTG AACATGCTAC AGACGCGTGC ATCCAGCATT CAGCTGTTGA CCGATGAGCA GCGTCAGCAG GTGGAAGTAC AGCTTGCCGA ACGGATCCAG CAGGAACAAC AGGGCAACGT TGAGCGTGAG CAAGCACTGA CTACGCTACG CTGGTTTGAG CAACTGACGC AGCAGCAAAC GTCGGTAACT CATACGCAGG CGCAACACAC GAGCGCCGAA TCCGCCATTC AGCAGGCCAG GCCGCAGCTC GATAAATTAG CCAATAGCGA ACCGGCAGAA AAACTGAGGC CGCTACATCA GGAAAAAGAG CGCTATCGGC AGGCGTCCCT GACCCTCGCC CAGCAGATTG AACAACTCAA CGGCAAGCTG GCCGCAGAAC AGCTGGCGTT AAGAACGTTA CATCAGCAAG AAGAAAAAGC GGAACAGGAC GTTAGTGAGC ACAAGCAGAT ACGACAACAG CAAGAGCAAC TGATCAACGA GCAGGTTGTA CCACTTGACC ATCGCATTGC TACTCTGGAA CAGCAAAAAA ACCAGCAGCA GAACGAACTG GCAAAAACGC AGGCTCGCCT GCACGCCGAC GACGCTAAAC AAACACTGGT CGCAGCGGAA CAACAGCAGG CTAAACGGCA GCTTGAACAG ATCCAGTCTT ACCGCCAGCA ACACGCACAT CATCAGCAGT GGGGAGAGCT GTTGCCTCTG TGGCGCACCC AGTTTCGGCA GTTGCGCCAG TTACAGGACG AGCACCAGAA GCTGAACCAG AAACAGGCAC AGCATACGGC AGAGTCGACG GCACGGCAGC AAGAAGCCGA CAAGCTGGCG GCACAGCAGC GTGAACAACA AAAAGTCGTT GATGCTGTAC GCCAGCAGTT CACGCAACAC GATGAAACGC GGCAACATCA GGACACGCAT CAGCCACTTT CCACTCTGCA CCAGCGCTTT AATCAGCTCA TGGATCAGCA GGCGACATGT CGACAACTCG CCACCGTCAG CGACCAATAC CAGCGCCTTC AGGTGCGCAA GCAGCAACAT CTCGCCAAAC TCGCTGAGGC ACAAGGCCAT ATCGACCAGT CAGAAATATT GCAGAAACAG CAGCAGTCTG AACATCAGCA ACGCAGCGAG CGTCTGGCCG ATTTGGAAAC GATATATCGG CAGGAAGTGC ATATCGTTAA GCTGGAAGCC GAACGGCAAC GGCTACAGGC CGGAGAGGCG TGCCCGCTGT GTGGCTCAAC CGAGCACCCC GCTATCGAGC GCTATCAGGC ACTACAACCG TCTGAAACCC AACGGCGTCT GACGGCGTTA CAGCAGGATG TAAACCAGTT AACCATCGCG CTGGCGAATA CCACTGCTGA ACTGAACGCA CGCTTACAGC AGCGGGAACA GCTGCAATCG GAACTTGCTC AATGTGATAG CGAACATCAG GCTCTGCTGC AACACTGGCA AAGTGTCAGT GAGCGCTTAC AAGTTACCTA CTCGCTGGAA CAGCAGGACG AGATAGCCGT CTGGCTTACA CTGCGTGAAG CCGAAGAACA GGCCATTCGA CAGCAGATTG CCGCGCGCGA GCAGTCGCAA AAACTGTGGC AGGAAAGTAA GGATTTACTG ACTGCCGCAG AAGCATTATT ACGGGATCTC GAACAGAAAA TCGCGCTGAA TGCCCAGCAA CAAACTTCGC TAGACGTTAC GCAGGAAGAA ACGACGCAGT CGCTGCAAAA CGCACACCAA CAGATCACGC AACAGACTCA GGACATCACG CAAACGCTGG CAACGGTGGG GCTTCTTTTG CCAGACACTG ACACACAGGA TGGCTGGCTG GCTCAGCGTG ACAGCGAATG GCAAAACTGG AAAGCCAAAG AGCAGGAGCA GTCTCGCTTA ACCCCTCTGT TAGCCACGCT GGAAAGCGAT CTTCAACATC TGCGTCACAG CGTAAGCGAG GCAACACAGC ACATCCAAAC GCAGCAACAG CAGTTGGCAC AGCACCTCGC GCAGCTCAAC ACAAGCCAAC AAGAGCGAAA GGTGCTATTT GGGGACAAGC AAATCACCGA TGTGCGCGAA CAGCTACAAC GAACCAGCCA GCAGCGTGAT GATGCACTCA GGCTCGCGCA ATCAGCCCGT CAGCAAACCG AAACGGCGTT AAGCCGTCTG ACGGGAGAGC TGGCTAGCAC GCAGCAGCAA TATGAACAGA GCACGTGCCA GCATGAGAGT GCAACAGAAC GCTTTACTCT GGCGTTGCAG CAAAGCACTT TCGTTGATGA AACCGCCTTT CTCCATGCAC TGCTTGATGA GCAGGAACGT CAAACGTTGC AGGAATTCAA GGAAACGCTG CATCAGCGCT TGCAGCAAGC GGCGACACTG CGCCAGCAGG CTGAACAGGC GCTACTTGAA CATCAACAAA AACGGCCAGC ATCCCTGACG GAAGACGCTA CGCAAGAGGC GATACAGCAG CAGTTGGCCG CGCTGGATGA CACGCTGAAA ACTAACTTGC GGCAGCAGGG GGAATTCCAG CGTCAGTTAT CTGACGACAA ACAACAGCGC CAGAACCAGC AGAATTTACT TAATGAGATT GCCCAAAGCC AGCAAAAGAA TGACGACTGG GAGACGTTAA ACTCGCTGAT CGGCTCCAGT AAAGGGGATA AATTCCGCAA ATTTGCTCAG GGGCTGACCT TGGATCATCT GGTCTATCTC GCCAATCTCC AGCTTTCACG CCTGCACGAT CGCTATCAGC TCAAACGTAA GCCCGGTGGC GATCTGGAAC TTCTGGTGAT GGATACCTGG CAGGCGGACG CCGAGCGCGA CACAAAAACG CTATCCGGCG GCGAAAGTTT TCTGGTCAGT CTGTCATTGG CGCTGGCGCT GTCCGACCTG GTCAGCCATA AAGCCAGTAT CGACTCGCTG TTTCTGGATG AAGGCTTTGG CACGCTGGAT GCCGAGACGC TGGATATCGC ACTGGATGCG CTGGATAACC TGAACGCCTC GGGTAAAACC ATCGGCGTCA TTAGCCATGT TGAAGCCATG AAAGAGCGGA TTCCGGTACA GATCAAAGTG CAGAAGGTTA ACGGGCTCGG CGTCAGCAGG CTGGCGCCGC AGTACGCCGT TTAG
|
Protein sequence | MKILSLRLKN LNALKGEWKI DFTQEPFSSN GLFAITGPTG AGKTTLLDAI CLALYHETPR LGQLSEKHND LMTHNTSECL AEVEFEVKGV GYRAFWSQRR ARNSPDGNLQ TPKAELALIE GGRILCEKIT DKKNRVEQIT GLDFGRFTRS MMLSQGQFAA FLNAQPKDRA DLLEELTGTD IYGLISERVY DKHRQALEAL NMLQTRASSI QLLTDEQRQQ VEVQLAERIQ QEQQGNVERE QALTTLRWFE QLTQQQTSVT HTQAQHTSAE SAIQQARPQL DKLANSEPAE KLRPLHQEKE RYRQASLTLA QQIEQLNGKL AAEQLALRTL HQQEEKAEQD VSEHKQIRQQ QEQLINEQVV PLDHRIATLE QQKNQQQNEL AKTQARLHAD DAKQTLVAAE QQQAKRQLEQ IQSYRQQHAH HQQWGELLPL WRTQFRQLRQ LQDEHQKLNQ KQAQHTAEST ARQQEADKLA AQQREQQKVV DAVRQQFTQH DETRQHQDTH QPLSTLHQRF NQLMDQQATC RQLATVSDQY QRLQVRKQQH LAKLAEAQGH IDQSEILQKQ QQSEHQQRSE RLADLETIYR QEVHIVKLEA ERQRLQAGEA CPLCGSTEHP AIERYQALQP SETQRRLTAL QQDVNQLTIA LANTTAELNA RLQQREQLQS ELAQCDSEHQ ALLQHWQSVS ERLQVTYSLE QQDEIAVWLT LREAEEQAIR QQIAAREQSQ KLWQESKDLL TAAEALLRDL EQKIALNAQQ QTSLDVTQEE TTQSLQNAHQ QITQQTQDIT QTLATVGLLL PDTDTQDGWL AQRDSEWQNW KAKEQEQSRL TPLLATLESD LQHLRHSVSE ATQHIQTQQQ QLAQHLAQLN TSQQERKVLF GDKQITDVRE QLQRTSQQRD DALRLAQSAR QQTETALSRL TGELASTQQQ YEQSTCQHES ATERFTLALQ QSTFVDETAF LHALLDEQER QTLQEFKETL HQRLQQAATL RQQAEQALLE HQQKRPASLT EDATQEAIQQ QLAALDDTLK TNLRQQGEFQ RQLSDDKQQR QNQQNLLNEI AQSQQKNDDW ETLNSLIGSS KGDKFRKFAQ GLTLDHLVYL ANLQLSRLHD RYQLKRKPGG DLELLVMDTW QADAERDTKT LSGGESFLVS LSLALALSDL VSHKASIDSL FLDEGFGTLD AETLDIALDA LDNLNASGKT IGVISHVEAM KERIPVQIKV QKVNGLGVSR LAPQYAV
|
| |