Gene PC1_0915 details

Gene Information

• Locus tag: PC1_0915
• Symbol: recD
• ID: 8131841
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Pectobacterium carotovorum subsp. carotovorum PC1
• Kingdom: Bacteria
• Replicon accession: NC_012917
• Strand: +
• Start bp: 1060635
• End bp: 1062494
• Gene Length: 1860 bp
• Protein Length: 619 aa
• Translation table: 11
• GC content: 59%
• IMG OID: 644864196
• Product: exonuclease V subunit alpha
• Protein accession: YP_003016501
• Protein GI: 253687311
• COG category: [L] Replication, recombination and repair
• COG ID: [COG0507] ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
• TIGRFAM ID: [TIGR01447] exodeoxyribonuclease V, alpha subunit

Plasmid Coverage information

• Num covering plasmid clones: 6
• Plasmid unclonability p-value: 0.718919
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGATTGCCT TACTTGAAAC GGCACTGGCG CGACGGCTGC TGCGCCCGTT GGATATTCAG 
TTTGCCAGAA TGCTGGTGGA TGAGACGCAG CCCGATCTGC TGCTAGCCGC CGCTTGTCTT 
AGCGCGCATT CGGGCGCGGG GCATGTGTGT TTACCGCTGG AGAATTTGCA GGCACAGACG 
CTGTTTGACG GCCGCGATCC TGAGTTGGCG CAGCAGCTGC TTACGGAGGT AGGGTTAAAC 
ACGGTTTCTG CATGGCAACA GCGTTTGTTG GCGTCTGATG CTGTCAGCGA CGGCACGACG 
TCAACGCCGC TGGTGCTGCA AGGAGAAAAA CTGTATTTAC AGCGCAGCTG GCAGAGTGAG 
GGACGTGTAG CGCGGTTTAT CGCCAGCGAG CGCGATACGA TGTCGATTGA TGAACCTGCG 
ATCCGATCGG TTCTGGATCG GCTGTTTCCT GACACGGGCG AAGCGGTTGA CTGGCAGAAG 
GTGGCCGCTG CTGTCGCATT GACGCGCCGC ATTGCGATTA TTTCCGGCGG ACCGGGGACG 
GGGAAAACCA CAACGGTCGC CAGGCTGTTG GCGGCGCTGA TTGAGCTGAA TACGGGAGAG 
GCGTTACGTA TTCAATTAGC CGCGCCGACC GGGAAAGCGG CTGCGCGGCT AACGGAGTCG 
CTGGGGCAGG CTCTGCACCG TCTGTCTGTC GAGCCTCAAC AGCGGGAAGC GTTTCCGCAA 
GAGGCGACGA CGCTGCATCG ACTGTTGGGC GCGGTGACGG ATAGTCAGCG CCTGCGTCAC 
CATCAGGACA ATCCGCTGCA TCTGGATGTG CTGATTGTGG ATGAGGCGTC GATGGTCGAT 
CTGCCGATGA TGGCGAATGT GATCGCTGCG CTTCCGCCAC ACGCCAGAAT TATCTTTCTT 
GGCGATCGCG ATCAACTGGC GTCCGTCGAG GCGGGAGCAG TACTGGGGGA TATCTGCCGT 
TTTGCCGAGG CGGGCTATAG CCGCGCGCGG GCGCAGCAAC TGCAGCGGCT GACGGGCTGT 
AAATTGGATG AAAGTGGTCC TGAAGGACAG GCGACGGTCA GTGACAGTAT CTGTCTGTTG 
CGCCGGAGCT ACCGTTTCGA TCCGCATTCC GGTATTGGCC AACTGGCGCT GGCAGTGAAC 
GGCGGCGATG ATGTTCGCGT GCGTGCGGTG CTGAACGGTG AGTTTGCTGA TATCACCTGT 
AGTCCATTAG CTGAGGCTGA AGAGTACCAG GCCATGCTGG CACAGTGTGT TGAAGGGTAT 
CGCGATTATC TGCAACTGAT TGCTGCGGGA GCCTCGCCGG ATGCTGTGCT GCTTGCCTTC 
CAGCGCTATC GCCAGCTGTG CGCGCTGCGC GAAGGGCCGT TTGGTGTAGC AGGGCTGAAT 
CAGCGCATCG AGCAGGCTTT GCATCAGGCT GGGCTAATTC AGCGCAGTCG TAATCCGCTT 
AACCGCTGGT ATCCCGGCCG CCCAGTCATG ATTGAACGGA ATGATGCCGC ATTGGGCCTC 
TTCAATGGCG ATATTGGTAT CGCCATGACG GGGGAAAGCG GTGAACTACG CGTGTTTTTC 
CCCTTGCCGA ATGGCGAAAC CAAAGATGTC ACACCAAGCC GTTTGCCGCC GCACGAAACG 
GCCTATGCGA TGACGGTACA TAAATCGCAA GGGTCGGAGT TCGATCATAC CGCGCTGGTG 
TTGCCGAACC ACTATTTGCC GGTGCTGACG CGGGAGTTGG TGTATACCGC CATCACCCGT 
GCACGCCAGC GTTTATCTCT CTATACCGAT ATCAGGATCC TCTGTCGTGC GGTGAAGACG 
CCAACGCAGC GCTATAGCGG TTTGGAAGCG CGAATTAGCG CGTTAATGGC ACGTTCTTGA 

 

Protein sequence

MIALLETALA RRLLRPLDIQ FARMLVDETQ PDLLLAAACL SAHSGAGHVC LPLENLQAQT 
LFDGRDPELA QQLLTEVGLN TVSAWQQRLL ASDAVSDGTT STPLVLQGEK LYLQRSWQSE 
GRVARFIASE RDTMSIDEPA IRSVLDRLFP DTGEAVDWQK VAAAVALTRR IAIISGGPGT 
GKTTTVARLL AALIELNTGE ALRIQLAAPT GKAAARLTES LGQALHRLSV EPQQREAFPQ 
EATTLHRLLG AVTDSQRLRH HQDNPLHLDV LIVDEASMVD LPMMANVIAA LPPHARIIFL 
GDRDQLASVE AGAVLGDICR FAEAGYSRAR AQQLQRLTGC KLDESGPEGQ ATVSDSICLL 
RRSYRFDPHS GIGQLALAVN GGDDVRVRAV LNGEFADITC SPLAEAEEYQ AMLAQCVEGY 
RDYLQLIAAG ASPDAVLLAF QRYRQLCALR EGPFGVAGLN QRIEQALHQA GLIQRSRNPL 
NRWYPGRPVM IERNDAALGL FNGDIGIAMT GESGELRVFF PLPNGETKDV TPSRLPPHET 
AYAMTVHKSQ GSEFDHTALV LPNHYLPVLT RELVYTAITR ARQRLSLYTD IRILCRAVKT 
PTQRYSGLEA RISALMARS