Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0879 |
Symbol | |
ID | 8131805 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 1022954 |
End bp | 1024045 |
Gene Length | 1092 bp |
Protein Length | 363 aa |
Translation table | 11 |
GC content | 54% |
IMG OID | 644864160 |
Product | transcriptional regulator, AraC family |
Protein accession | YP_003016465 |
Protein GI | 253687275 |
COG category | [K] Transcription |
COG ID | [COG2207] AraC-type DNA-binding domain-containing proteins |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCGCGA TTCCCTTACC GTTTATCACC GCACTTCTGC TGGTTATTTT GTTTTTTCGC ATCCTATTTC TGGATATTCA GCACAATCTT CCTGACAAGA ACACCAAAAA ACGCAATGCC AAGGCGGAAG CGGTCTTCAT CGGCGTGAGC TGTCTTGCTC TGACGCTGGT GGCATTACGC TGGGGTAGCC ACGTGGCTTT ACCCCTGTTT ATCCAACCTG CGATTGCCGC ATCAATTCCG CCTCTGCTAT GGCTTTGCCT TTTCCCACGC GGCGAAAAGA AATCTGAGGA TCTGCCCCGC AGACGCGGCA GTTCTCTCGG GCATCTGTTA CCACCTTTAC TCATTCTTGG CGCAAACGCC GTCCAAAGCA AAACGACCAT TCCGCTCATC GATATAACGC TGGTGAGTAT TTACTTCGTT TATGGAGTCG CGCTGATTTA CACCGCCCGC CTTCTTCAAA CATCAGCGTC TATGTGGAAA CGCGCGCCGT TTATCGCCGG GCTGTATGTG TTGATCTCCG GCGCGATTGA TATGGTGATT GCACTGGATA TCGCGTTCTA CAGCGGCAGC CGCGCGACGA CCATCATCAC CGCATTCCAC CTTGTCATGC TGGCGATATT GACCCTGCTG ATCGTCACAC ACCGTGCAAG CCCGCAAGCA GGGCTTGTCC CGCCAACTGA CCCGAAACCC GAAGCACCGC CTGCCACCGA AGACGAACAC CAGCTCGCAA AAGCGTTAGA TGATTTCATC CGCACTCACG CGCTGTATAC CGATCCGGGC ATGACGCTTC AACGTCTGAG CAGACGCATG GGCATACCGC TCCGGCGCTT GTCCGAAACC ATCAACCGCG TTCACGGTCG TAATTTTTCT CAGGTGATGA ACGAATATCG CATCGAGGAG GCTAAGCGCC TCCTCAGCGA AACAGATGAC CGAATTACGG ATATCATGCT GGCCAGCGGA TTTCAGACCA AATCAAACTT CAACCGCGAA TTTCTGCGGC TAACGGGAAT GAGCCCCAGC GTCTGGCGTA GTCAGTACCC ACTTCGGGAA CAGGTTACGG TTTCTGCCAC GCCGCCTGAA GAAACTCTCT GA
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Protein sequence | MTAIPLPFIT ALLLVILFFR ILFLDIQHNL PDKNTKKRNA KAEAVFIGVS CLALTLVALR WGSHVALPLF IQPAIAASIP PLLWLCLFPR GEKKSEDLPR RRGSSLGHLL PPLLILGANA VQSKTTIPLI DITLVSIYFV YGVALIYTAR LLQTSASMWK RAPFIAGLYV LISGAIDMVI ALDIAFYSGS RATTIITAFH LVMLAILTLL IVTHRASPQA GLVPPTDPKP EAPPATEDEH QLAKALDDFI RTHALYTDPG MTLQRLSRRM GIPLRRLSET INRVHGRNFS QVMNEYRIEE AKRLLSETDD RITDIMLASG FQTKSNFNRE FLRLTGMSPS VWRSQYPLRE QVTVSATPPE ETL
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