Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0781 |
Symbol | ribB |
ID | 8131706 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | + |
Start bp | 913584 |
End bp | 914237 |
Gene Length | 654 bp |
Protein Length | 217 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 644864065 |
Product | 3,4-dihydroxy-2-butanone 4-phosphate synthase |
Protein accession | YP_003016371 |
Protein GI | 253687181 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0108] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
TIGRFAM ID | [TIGR00506] 3,4-dihydroxy-2-butanone 4-phosphate synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 0.0028978 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCAGA CATTACTTTC TGAATTTGGC AATCCTGCTG AACGCGTAGA ACGCGCACTT GATGCATTGC GTCATGGCCG CGGCGTGCTG GTGTTGGATG ATGAAGATCG TGAAAACGAA GGTGACATGA TCTTCTCCGC TGAAAATATG ACCGTTGAAC AGATGGCGCT GACGATTCGT CACGGTAGTG GCATCGTGTG TCTGTGCCTG ACGGAAGAGC GTCGCCAGCA GTTGGAATTG CCGATGATGG TGGAGAAGAA CTCCAGCCAT TACCAAACGG CGTTCACCGT AACCATCGAA GCCGCCGAAG GCGTGACGAC GGGGGTTTCT GCTGCGGATC GTCTGACGAC TATTCGTGCC GCAATTGCGG ATAACGCCAA GCCGAGCGAT CTGAATCGTC CTGGCCACGT ATTCCCGCTG CGCGCCCAGC CGGGTGGCGT GTTAACGCGC GGTGGTCACA CCGAAGCAAC GGTTGACCTG ATGACGCTGG CGGGCCTGAA GCCGTCTGGC GTTTTGTGCG AACTGACGAA CGATGATGGC TCAATGGCGC ACGCGCCGGA AGTGATCGCG TTTGCCAAAC AGCACGATAT GCCGGTACTG ACGATTGAAG ATCTGGTGGC TTACCGCGTA GCGGCAGAGC GCAAAGCCAG CTGA
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Protein sequence | MNQTLLSEFG NPAERVERAL DALRHGRGVL VLDDEDRENE GDMIFSAENM TVEQMALTIR HGSGIVCLCL TEERRQQLEL PMMVEKNSSH YQTAFTVTIE AAEGVTTGVS AADRLTTIRA AIADNAKPSD LNRPGHVFPL RAQPGGVLTR GGHTEATVDL MTLAGLKPSG VLCELTNDDG SMAHAPEVIA FAKQHDMPVL TIEDLVAYRV AAERKAS
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