| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0670 |
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| Symbol | |
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| ID | 8131594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 775545 |
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| End bp | 776945 |
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| Gene Length | 1401 bp |
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| Protein Length | 466 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 644863955 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_003016261 |
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| Protein GI | 253687071 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.811515 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGATTCGCA AGAATAACCT GCAAAAAAGT GAAGCAGGAA AAAGCACGCC TCAGCCTGCG
CCTGCTGCCA ATGTGGCAGA ACTGAAAACG CGTCCGGCTG CGGAGAACCG CACACAGCCT
GCGGCGAGCT CTGCGTCTGG GTCCGCTCCA GCCGCGCGCC AGACGGACAG CCGAACCAGC
CAGCGCCGGA TTATCCGCGC ACAGCTCTAC GATCAGATCG ACGCAGGTAA AGCGGCGATG
ATGGGGCGTG ACAAGCTGCT GGTGCAGATC GAGACGGTGA TCCGCCGCAT CTGTGATGAG
CAGCGCTTAC AGCTTTCCCG GCAGGAAGAG GAAGCCATCG CTGCCGAAAT GCTGGACGAG
ATGACCGGGA TCGGGCCGAT CCAGCCGCTG CTGTCGGATG ACACGGTCAA CGATATTCTG
GTTAACGGTG CGGGACAGGT GTTTGTCGAG CGCTTTGGCA AACTGGAACT GTCGCCGATT
ACCTTCATTG ATGAAGAACA TGTATTTAAC ACCGCGCAGC GTATTGCTGC CGCAGTGGGG
CGCCGCATCG ATGAAGCCAG TCCGATGGTG GATGCGCGTC TGCCTGACGG TAGCCGCGTC
AACGTCATCA CCTATCCGTT GGCGATTGAC GGCACCACGA TCTCGATCCG TAAATTTATG
CGCCGCAACC TGTCGCTGGA AATGCTGGCA GAGCGCCGCT GCATGTCCTA CGCGATGGCG
GATGTGCTGA ACAAAGCGAT GCAGGCGCGC GTTAACGTGA TCGTCTCCGG CGGAACGGGC
GCGGGTAAAA CCACCTTGCT GAATGCGCTG TCGCAGAAGA TCGGCAGCAC CGATCGCATC
ATCACCATTG AAGATGCCGC CGAACTGCAA TTGCAGCAGG AGCACGTGGT GAGACTGGAA
ACGCGTCCTG TCAGCGCCGA AGGCACCGGC CGCGTCGATC AGCGCGATCT GATGCGTAAC
GCCCTGCGTA TGCGGCCCGA CCGCATCATT CTGGGCGAGG TGCGCGGCGG CGAGAGCTTT
GACATGTTGC AGGCGATGAA CACCGGCCAC GACGGTTCGC TGTGTACGGT ACACGCCAAC
ACCTCGCGCG ATGCGATACA GCGTCTGGAA AACATGGTGA TGATGGCGAA CATGCAACTG
CCACTGATGG CGATCCGCCG CCAGATCGCC AGCGCGGTTC ACCTGATCGT GCAGATCGAA
CGTATGCGCG ACGGCATGCG CCGCGTGGTA TCCATCACCG AAGTGTGTGG CATGGAGAAC
GAAGTGATCC AGCTTCAGGA TCTGTTCAGC TTCAACATTC AGGGGATGGA TGGACAGGGT
CTGTTGACGG GGGAATATGT TCAGCACATT CAGCGCCCGC AGTTCTACAG CGACAAATCG
CACCTGTTTG ATGCGCAGTA A
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| Protein sequence | MIRKNNLQKS EAGKSTPQPA PAANVAELKT RPAAENRTQP AASSASGSAP AARQTDSRTS
QRRIIRAQLY DQIDAGKAAM MGRDKLLVQI ETVIRRICDE QRLQLSRQEE EAIAAEMLDE
MTGIGPIQPL LSDDTVNDIL VNGAGQVFVE RFGKLELSPI TFIDEEHVFN TAQRIAAAVG
RRIDEASPMV DARLPDGSRV NVITYPLAID GTTISIRKFM RRNLSLEMLA ERRCMSYAMA
DVLNKAMQAR VNVIVSGGTG AGKTTLLNAL SQKIGSTDRI ITIEDAAELQ LQQEHVVRLE
TRPVSAEGTG RVDQRDLMRN ALRMRPDRII LGEVRGGESF DMLQAMNTGH DGSLCTVHAN
TSRDAIQRLE NMVMMANMQL PLMAIRRQIA SAVHLIVQIE RMRDGMRRVV SITEVCGMEN
EVIQLQDLFS FNIQGMDGQG LLTGEYVQHI QRPQFYSDKS HLFDAQ
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