| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0591 |
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| Symbol | |
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| ID | 8131511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | + |
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| Start bp | 689540 |
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| End bp | 691417 |
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| Gene Length | 1878 bp |
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| Protein Length | 625 aa |
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| Translation table | 11 |
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| GC content | 55% |
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| IMG OID | 644863872 |
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| Product | ATP-dependent RNA helicase DeaD |
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| Protein accession | YP_003016182 |
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| Protein GI | 253686992 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACTGATT TAGTAACTTC TTTTGCCGAT TTGGGGTTGA ACACCTCTAT CCTTAATGCC
CTGACTGATT TGGGCTATGA AAAACCGTCT CCGATTCAGG CGGAATGTAT TCCTCACCTG
CTGAACGGTC GCGATGTGCT GGGTATGGCA CAGACCGGTA GCGGTAAAAC AGCAGCGTTC
TCTCTGCCAT TACTGAACAA TCTGAAACCT GAGCTTAAAG CACCACAGAT TCTGGTGCTG
GCACCGACCC GTGAGCTGGC GGTGCAGGTA GCAGAGGCCT GCAATGATTT CTCCAAACAT
ATGCACGGCG TTAACGTCGT CGCACTGTAC GGCGGCCAAC GCTATGACGT GCAACTGCGC
GCGCTGCGCC AGGGTGCGCA GATTGTCGTG GGTACGCCGG GTCGTCTGCT GGATCACCTG
AAACGCGGTA CGCTGGATCT GTCCAACCTG AGTGGTCTGG TACTGGACGA AGCCGATGAA
ATGCTGCGTA TGGGCTTCAT CGAAGATGTT GAAAACATCA TGGCTCAGAT CCCTGCTGAA
CATCAGACTG CGCTGTTCTC TGCGACCATG CCTGAAGCGA TTCGCCGCAT TACGCGCCGT
TTCATGAAAG ATCCGCAGGA AGTTCGCATT CAATCCAGCA TTACCACGCG TCCAGACATC
AGCCAGAGCT ACTGGACGGT GCAGGGTATG CGTAAAAATG AAGCGCTGGT GCGTTTCCTG
GAAGCAGAAG ATTTTGATGC GGCGATTATT TTCGTTCGTA CCAAAAATGC AACACTGGAA
GTGGCTGAAG CCCTGGAACG TAGCGGCTAC AACAGCGCCG CGCTGAACGG TGATATGAAC
CAGGCGCTGC GTGAGCAAAC GCTGGAGCGT CTGAAAGATG GCCGTCTTGA TATCCTGATC
GCGACCGACG TTGCGGCGCG TGGTCTGGAC GTTGAACGTA TCAGCCTGGT CGTCAACTAC
GATATCCCGA TGGATGCAGA GTCTTACGTT CACCGTATTG GCCGTACCGG TCGTGCGGGT
CGTGCGGGTC GTGCTCTGCT GTTTGTTGAA AACCGTGAAC GCCGCCTGCT GCGCAACGTT
GAGCGCACAA TGAAGCTGAC GATTCCTGAA GTGGAATTGC CAAATGCAGA ATTGCTGGGT
CAACGCCGTC TGGCTAAGTT TGCTGCTAAA GTACAGCAGC AGTTGGAAAG TAGCGATCTG
GATATGTACC GCGCGCTGCT GACTAAACTG CAACCGCAGG AAGAGCTGGA TGTCGAAACG
CTGGCTGCTG CGCTGCTGAA AATGGCGCAG GGTGAACGTC CTCTGATTCT GCCACCGGAT
CCTGTGTTCC GTCCTCGTCG CGAATTCCGC GATCGTGATG ATTCACGTGG CGATCGTCGC
CGCGATCCGC GCGATTCTCG CGAAAGCCGT GACGGTGACC GTCCGCAACG CCGTGAGCGT
CGTGATGCAG GCGAAATGGA ACTGTATCGT ATCGAAGTGG GCCGTGATGA CGGTGTTGAA
GTTCGTCACA TTGTTGGCGC AATTGCCAAC GAAGGCGATA TCAGCAGCCG CTACATCGGT
AACATCAAGC TATTCGCGTC TCACTCGACG ATTGAACTGC CGAAAGGTAT GCCGGGTGAC
CTGTTATCAC ACTTTACCCG CACGCGTATT CTGAACAAAC CGATGAACAT GCAATTGCTG
GGTGATGCTC AGCCGCATGA ACGTCGTGGC GGTGGCCGTC CTGGTGGCGA ACGTCGTGAT
GGCGCTGCTC CACGTCGCTC TTTCGGCGGT GGTGAACGTC GTGAAGGTAA CGGTGGTGAG
CGTCGCGAGC GTTCTTTCAA CCGTGATAAC CGTGACGGTG CTTCACGCGC GCCACGTCGT
CGTCCTGCTG ACGCGTAA
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| Protein sequence | MTDLVTSFAD LGLNTSILNA LTDLGYEKPS PIQAECIPHL LNGRDVLGMA QTGSGKTAAF
SLPLLNNLKP ELKAPQILVL APTRELAVQV AEACNDFSKH MHGVNVVALY GGQRYDVQLR
ALRQGAQIVV GTPGRLLDHL KRGTLDLSNL SGLVLDEADE MLRMGFIEDV ENIMAQIPAE
HQTALFSATM PEAIRRITRR FMKDPQEVRI QSSITTRPDI SQSYWTVQGM RKNEALVRFL
EAEDFDAAII FVRTKNATLE VAEALERSGY NSAALNGDMN QALREQTLER LKDGRLDILI
ATDVAARGLD VERISLVVNY DIPMDAESYV HRIGRTGRAG RAGRALLFVE NRERRLLRNV
ERTMKLTIPE VELPNAELLG QRRLAKFAAK VQQQLESSDL DMYRALLTKL QPQEELDVET
LAAALLKMAQ GERPLILPPD PVFRPRREFR DRDDSRGDRR RDPRDSRESR DGDRPQRRER
RDAGEMELYR IEVGRDDGVE VRHIVGAIAN EGDISSRYIG NIKLFASHST IELPKGMPGD
LLSHFTRTRI LNKPMNMQLL GDAQPHERRG GGRPGGERRD GAAPRRSFGG GERREGNGGE
RRERSFNRDN RDGASRAPRR RPADA
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