Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0557 |
Symbol | |
ID | 8131475 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 645315 |
End bp | 646286 |
Gene Length | 972 bp |
Protein Length | 323 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 644863836 |
Product | octaprenyl diphosphate synthase |
Protein accession | YP_003016148 |
Protein GI | 253686958 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0142] Geranylgeranyl pyrophosphate synthase |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 0 |
Plasmid unclonability p-value | 0.0000813107 |
Plasmid hitchhiking | No |
Plasmid clonability | unclonable |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAATCTAG AACAAATTAC AACATTAACC GCACAGGATA TGGCAGCTGT TAATAACGTC ATTCTTGAAC AACTGAATTC CGACGTCGTT TTGATCAACC AGCTTGGGCA TTACATCATC AGCGGCGGTG GAAAACGTAT ACGCCCAATG ATTGCTGTGC TAGCCGCCAG AGCCCTCGAC TATAACGGTG ATAAACATGT CACTGTCGCC GCACTGATCG AATTTATCCA TACCGCAACG CTATTGCATG ATGACGTGGT AGACGAATCC GATATGCGAC GGGGGAAAGC AACAGCCAAT GCCGCCTTTG GCAATGCCGC GAGCGTGCTG GTTGGGGATT TCATCTATAC CCGCGCCTTC CAGATGATGA CCAGCCTTGA ATCGTTACGC GTACTGGCGC TGATGTCAGA AGCGGTAAAC GTAATTGCCG AAGGCGAAGT CTTGCAGTTA ATGAACTGCA ACGATCCGGA TATTACCGAA GAAAGCTATA TGCGTGTCAT TTACAGTAAA ACGGCACGTT TATTTGAAGC CGCCGCGCAA TCGTCATCCA TCCTTGCTGG CGCGACGCCA GAGCAAGAAA AAGCGCTTCA GGACTATGGC CGCTATCTGG GCACCGCGTT CCAGTTAATT GACGACCTGC TTGATTACAG CGCAGACGGC AAAACGCTAG GCAAAAACAC GGGGGATGAC CTCAATGAGG GTAAACCAAC GCTGCCGCTG CTGCACGCCA TGCATAATGG TAATGCAGAA CAGAGTTCGC TGATTCGTAA GGCAATTGAA GAAGGAAACG GGCGCCATCT TCTGGAACCT GTGCTTGCCG CCATGCAACA ATGTGGTTCG CTTGATTACA CACGTCAGCG TGCAGAAGAA GAGGCAGATA AAGCGATTAG CGCATTGCAG CAGTTGCCAG AAACGCCATA CCGTATTGCG CTCGAAGGCC TTGCCCACTT AGCCGTACAG CGCGATTTCT AA
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Protein sequence | MNLEQITTLT AQDMAAVNNV ILEQLNSDVV LINQLGHYII SGGGKRIRPM IAVLAARALD YNGDKHVTVA ALIEFIHTAT LLHDDVVDES DMRRGKATAN AAFGNAASVL VGDFIYTRAF QMMTSLESLR VLALMSEAVN VIAEGEVLQL MNCNDPDITE ESYMRVIYSK TARLFEAAAQ SSSILAGATP EQEKALQDYG RYLGTAFQLI DDLLDYSADG KTLGKNTGDD LNEGKPTLPL LHAMHNGNAE QSSLIRKAIE EGNGRHLLEP VLAAMQQCGS LDYTRQRAEE EADKAISALQ QLPETPYRIA LEGLAHLAVQ RDF
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