Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PC1_0313 |
Symbol | tolC |
ID | 8131227 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
Kingdom | Bacteria |
Replicon accession | NC_012917 |
Strand | - |
Start bp | 365493 |
End bp | 366884 |
Gene Length | 1392 bp |
Protein Length | 463 aa |
Translation table | 11 |
GC content | 53% |
IMG OID | 644863593 |
Product | outer membrane channel protein |
Protein accession | YP_003015908 |
Protein GI | 253686718 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGAAAT TGCTCCCTCT TCTGATTGGT CTGAGCCTGG GCGGTTTTAG CGCCATGAGT CAGGCGGAAA ACCTGTTACA GGTCTACCAG CAGGCAAAAA GCACCAACCC TGATTTACGC AGCTCTGCGG CAACCCGCGA CGCCGCGTTT GAAAAAATTA ACGAATCACG TAGCCCGTTA CTGCCGCAGT TGGGAATCAA CGCCGGTTAT ACCTATAACA AAGGTTACCG TGACAGCAAT GGCGTCAACA ACAACGAGAA AAGCGCGACA TTGCAGTTAA CCCAGACGCT GTTCGACATG TCCAAATGGC GTGCGCTGAC GTTGCAGGAA AAACAAGCGG GTATTGAAGA CGTCACCTAT CAGACAGCCC AGCAAAACCT GATGCTGAAT ACAGCAACCG CCTATTTCAA CGTCCTGCGT GCCATTGACT CGCTGTCCTA CATCAATGCG CAGAAGCAGG CGATTTATCG CCAGTTAGAC CAAACGACAC AGCGTTTCAA CGTGGGTCTG GTTGCCATTA CCGACGTCCA GAACGCCCGT GCCCAGTATG ACAGCGTGTT GGCCAATGAA GTGTTGACGC GTAATACGCT GGATAATGCG TTGGAATCAC TGCGCCAGAT TACCGGTAAT TTCTACCCGC AGCTGGCCGG CCTGAACATC GAGCGTTTCT CTACGCAGAA GCCTGAAGCC GTTAACAACC TGCTGAAAGA AGCTGAAAAC CGCAACCTGA ACCTGCTGTC CGCACGTTTG AGTCAGGATT TGGCCCGTGA GCAGATTCGT TCCGCTGAAA CAGGCTACAT GCCGACCTTG GATCTCACTG CATCGACGGG CGTGAGCGAT ACCCGTTATT CAGGTTCCCG CACGAATAGC GGCAACTTCA ATGATACCGA TGCAGGGCAA CACCGAGTTG GCATTAACTT CACTCTGCCA CTTTATAGCG GCGGCGCGAC CAACTCACAG GTGAAACAAG CGCAGCACAG CTACGTCAGC GCCAGCGAAC TGCTGGAGAG CGCACACCGT TCTGTTATCC AGACTGTACG TTCATCGTTT AACAATATTT CTGCCTCCAT CAGCAGCATC AACGCTTACA AACAGGCTGA AGTGTCTGCA CAAAGCTCTC TGGATGCGAT GGAAGCTGGT TATCAGGTAG GCACGCGCAC CATCGTTGAC GTACTGGATG CCACCACCAC GCTGTATAAC GCGAAACAGC AGCTCTCCAG CGCACGCTAT GATTACCTGA TCAATCAGTT AAACATCAAA TCCGCGCAGG GTACGCTGAA TGAAGCCGAT CTGCAGGCGC TGAATGCGGC ACTGGGTCAG CCGGTTTCAA CGACACCGAC CGTAACGGAC AACAGCGCTC CGCTGGCAAC AACCGCCTCG GCACAGCGTT AA
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Protein sequence | MKKLLPLLIG LSLGGFSAMS QAENLLQVYQ QAKSTNPDLR SSAATRDAAF EKINESRSPL LPQLGINAGY TYNKGYRDSN GVNNNEKSAT LQLTQTLFDM SKWRALTLQE KQAGIEDVTY QTAQQNLMLN TATAYFNVLR AIDSLSYINA QKQAIYRQLD QTTQRFNVGL VAITDVQNAR AQYDSVLANE VLTRNTLDNA LESLRQITGN FYPQLAGLNI ERFSTQKPEA VNNLLKEAEN RNLNLLSARL SQDLAREQIR SAETGYMPTL DLTASTGVSD TRYSGSRTNS GNFNDTDAGQ HRVGINFTLP LYSGGATNSQ VKQAQHSYVS ASELLESAHR SVIQTVRSSF NNISASISSI NAYKQAEVSA QSSLDAMEAG YQVGTRTIVD VLDATTTLYN AKQQLSSARY DYLINQLNIK SAQGTLNEAD LQALNAALGQ PVSTTPTVTD NSAPLATTAS AQR
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