| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0291 |
|---|
| Symbol | |
|---|
| ID | 8131204 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 337414 |
|---|
| End bp | 338565 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 52% |
|---|
| IMG OID | 644863571 |
|---|
| Product | AFG1-family ATPase |
|---|
| Protein accession | YP_003015886 |
|---|
| Protein GI | 253686696 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1485] Predicted ATPase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00126781 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTACTC CACAGACAAC ACGGCAGCAA ACAACACCTT TGGCACTTTA TCAGCAGGCG
CTTTCCGCTG GTGAATATCA GCCGGATGAG GTGCAGCGGC AAACGGTTGT GCGCCTGGAA
GCGATACATC AGGCGCTATG CGAACGTGCT GCTGATGACA ATGCAGGGGC ATCCGGCCGC
GTGGGAAAAT GGCGTAGCTG GCTTGGGCTA CGTGAGAAAC GTGAATCTGC GCCAGTCCAA
GGGTTGTATA TGTGGGGCGG CGTCGGACGC GGTAAAACCT GGCTGATGGA TATGTTTTTT
CACAGCTTGC CCGCTGAGCG CAAAATGCGC CTGCATTTTC ATCGTTTTAT GCTGCGCGTG
CATGAAGAAC TTAACCAGTT TCAGGGGCAG GAGAATCCGC TGGAAAAAGT GGCTGATGGG
TTCAAAGCTG AAACTGATGT GCTGTGTTTC GATGAATTTT TTGTCTCTGA CATTACCGAT
GCGATGTTGC TGGCTGAACT ACTGCGGGCG CTGTTTGCTC GTGGCATCGC GCTGGTGGCG
ACGTCGAATA TTCCGCCAGA CGATCTCTAT CGCAATGGAT TACAACGCGC CCGTTTTCTT
CCTGCGATTG AGCTGATTAA ACAGCACTGT GAAGTGCGTA ATGTCGATGC AGGTATCGAT
TATCGTTTGC GCACACTGAC ACAGGCACAC CTTTATCTGT CTCCGTTGAA TGAAGATACC
GAGGCTACGA TGCAGCAGAT GTTTACCCGC CTGACGGGGA AACGCTGGCA GACGCCAGGG
CCGGTGCTGG AGATTAATCA TCGCCCGTTG GCGACACTCG GTGTGAGTGA GGGCGTGCTG
GCGGTTGATT TCCACACACT GTGTACTGAA GCGCGCAGCC AGAATGATTA CATCGCGCTT
TCGCGTCTCT ACCACACGAT GCTGCTGCAC AATGTGACCG TGATGGAAAC GAAGGAAGAA
AACACCGCTC GCCGTTTTCT GGCGCTGGTG GATGAGTGCT ACGAGCGTCG CATCAAATTG
ATTATTTCTG CCCAAGCATC CATGTTTGAG ATTTATCAGG GAGAACACCT GAAATTTGAA
TATCAGCGCT GTCTGTCCCG TTTGCAGGAA ATGCAGAGCG AAGAGTACTT ACGACAGCCA
CATTTGGCAT AA
|
|---|
| Protein sequence | MATPQTTRQQ TTPLALYQQA LSAGEYQPDE VQRQTVVRLE AIHQALCERA ADDNAGASGR
VGKWRSWLGL REKRESAPVQ GLYMWGGVGR GKTWLMDMFF HSLPAERKMR LHFHRFMLRV
HEELNQFQGQ ENPLEKVADG FKAETDVLCF DEFFVSDITD AMLLAELLRA LFARGIALVA
TSNIPPDDLY RNGLQRARFL PAIELIKQHC EVRNVDAGID YRLRTLTQAH LYLSPLNEDT
EATMQQMFTR LTGKRWQTPG PVLEINHRPL ATLGVSEGVL AVDFHTLCTE ARSQNDYIAL
SRLYHTMLLH NVTVMETKEE NTARRFLALV DECYERRIKL IISAQASMFE IYQGEHLKFE
YQRCLSRLQE MQSEEYLRQP HLA
|
|---|
| |