| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0202 |
|---|
| Symbol | rplA |
|---|
| ID | 8131110 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 237175 |
|---|
| End bp | 237879 |
|---|
| Gene Length | 705 bp |
|---|
| Protein Length | 234 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 50% |
|---|
| IMG OID | 644863478 |
|---|
| Product | 50S ribosomal protein L1 |
|---|
| Protein accession | YP_003015798 |
|---|
| Protein GI | 253686608 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0081] Ribosomal protein L1 |
|---|
| TIGRFAM ID | [TIGR01169] ribosomal protein L1, bacterial/chloroplast |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 4 |
|---|
| Plasmid unclonability p-value | 0.0394822 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCTAAGC TGACCAAGCG CATGCGCGTG ATCCGTGACA AAGTTGATGT AACTAAACAG
TATGACATCA ACGAAGCTGT TGCTCTGCTC AAAGAGCTGG CCACTGCTAA ATTCGTAGAA
AGTGTAGACG TAGCTGTTAA CCTCGGCATC GATGCACGTA AATCTGACCA AAACGTTCGC
GGTGCAACCG TTCTGCCTCA CGGCACCGGT CGTTCTGTTC GCGTAGCTGT CTTCACCCAA
GGTGCAAACG CTGAAGCTGC TAAAGCTGCT GGCGCTGAAT TCGTGGGCAT GGAAGATCTG
GCTGAACAGA TCAAGAAAGG CGAAATGGGC TTTGACGTCG TTATCGCATC TCCAGATGCA
ATGCGCGTTG TTGGTCAATT GGGTCAGGTT CTGGGTCCAC GTGGCCTGAT GCCAAACCCG
AAAGTGGGTA CTGTAACACC TAACGTTGCT GAAGCTGTTA ACAATGCTAA AGCAGGTCAG
GTTCGTTACC GTAATGACAA GAACGGTATC ATCCATACCA CTATCGGTAA GGTTGATTTC
GACTCTAACA AATTGAAAGA AAACCTGGAA GCCCTGCTGG TTGCGCTGAA AAAAGCAAAA
CCATCTCAGG CGAAAGGCGT GTACATCAAG AAAGTTAGCC TGTCTACCAC TATGGGCGCT
GGCGTTGCCG TCGACCAGAG CGGTCTGAAC GCTGCTGCTA ACTAA
|
|---|
| Protein sequence | MAKLTKRMRV IRDKVDVTKQ YDINEAVALL KELATAKFVE SVDVAVNLGI DARKSDQNVR
GATVLPHGTG RSVRVAVFTQ GANAEAAKAA GAEFVGMEDL AEQIKKGEMG FDVVIASPDA
MRVVGQLGQV LGPRGLMPNP KVGTVTPNVA EAVNNAKAGQ VRYRNDKNGI IHTTIGKVDF
DSNKLKENLE ALLVALKKAK PSQAKGVYIK KVSLSTTMGA GVAVDQSGLN AAAN
|
|---|
| |