| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0112 |
|---|
| Symbol | |
|---|
| ID | 8131012 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | - |
|---|
| Start bp | 138182 |
|---|
| End bp | 139852 |
|---|
| Gene Length | 1671 bp |
|---|
| Protein Length | 556 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 644863382 |
|---|
| Product | methyl-accepting chemotaxis sensory transducer |
|---|
| Protein accession | YP_003015710 |
|---|
| Protein GI | 253686520 |
|---|
| COG category | [N] Cell motility
[T] Signal transduction mechanisms |
|---|
| COG ID | [COG0840] Methyl-accepting chemotaxis protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCATA CAAAAAAAAT GAAACTGGGT ACTCAGGTCG GTTCAGGCTT TGCCATTGTT
ATTATTATTG GCCTATTAGT GGCTATCTTC GGCAGAATGC ACCTGGTTGG CCTCGGTAAT
ACTACGGACA GGCTGGCCAA ACACCACCTT GCCAATCTCA TCGTGCTACA AGAGCTGAAA
GATAATCTTA ACGTCACGAT CAAAGCCACA TTGCGTATGT TGATCGCTAC CGAGCAAAAG
GTTCTGGAAG ACAATCAAAA ACTGATTGAA ACCACGAGTG CCAAAAACAC ACAGCTCGTC
ACTCAGTTGG AAACCAATTT ACGGGCAACC GAAGTTCGCA ATATTCTGGG CGAGCTACAG
CAAAACCGCA CTGAATTTGC CAGAGTAGGC CGTCAGGCCG TCGCACTGTC ACTCAGCAAT
AGACAGGCTG AATCTATCGA GTTAGTTAAA ACCCAGCTTG AACCCATACA AACCAAGCTT
TTTAACAATC TGAACACCAT GATTCAGTTG CAGAGAGACT ACACCACGCA AACGGCAACC
AACGCGATTG AAGAGTCCTA CTATGATGGC AATTCCCTGC TCATTCTGGC TGTCATCGCC
TCATTATTCG GCGCTGGCAT CGCCTGGCTG ATTACCCGCC ATATCAAGAA GCAGTTGGGG
GGTGAGCCTG CCTATGCCAC GCAGGTCACA CAGGAAATCG CACAAGGTAA TCTCGCGATA
CCGGTCGATC TGGCGTCAGG TGACAATACC AGTTTGCTGT TCGCGATGAA TAACATGCGC
AAAAGCTTAA GCAGCATCGT TGAACAGGTG CGTGAGAGCA GCGAATCTAT CGCCACCGGA
GCCAGACAGA TCGCCGCAGG CAGTGCTGAC CTCAGCCAGC GCACAGAGGA ACAGGCAGCC
AACTTACAGC AAACCGCAGC GTCTACGGAA GAAATGAGCC AAACGGTGCG TCAAAATACC
GATACCGTGC GTAACGCCGC TCAACTGGCG CAAGCCGCCA GCAACACCGC AGCTAAAGGC
GGTGAAGCAG TCGGGAATAT TGTTGTCACG ATGAAAGAAA TTACCGACAG TTCGCACAAG
ATTAACGACA TCATTAGCGT GATTGACGGC ATCGCTTTCC AGACCAATAT TCTGGCCCTC
AACGCCGCGG TCGAAGCGGC TCGGGCAGGC GAGCAAGGTC GTGGCTTTGC CGTGGTGGCT
GGCGAAGTCC GCTCGCTGGC ACAGCGTTCC GCCACCGCAG CCAAAGAGAT TAAAGAGCTG
ATCGGCCACA GCGTCGAGAA AGTCGAGACG GGCTCCGCAC TGGTCAGCGA TGCGGGCACA
ACAATCGAAG AGCTGGTTCG TCAGGCACGC CACGTTGCCG ATCTGATTAA CGAAATTGGT
ATTACCACGC AGGAACAAGA ATCCGGCGTC TCACAGATTC ATGAGGCGGT GAACCAACTC
GATCAGGTCA CGCAGCAGAA CGCCGCGCTC GTTGAGCAAT CCGCATCTGC GGCCGATAGC
CTGAGTGAGC AAGCCGCTCA TCTGGTAGAA CTGATGAAAG TCTTCATCGT TGAAGGCGGG
GCTCCGCAGC GCCTCGCTCC ACAGTTAAAA CGGCCTGACA GCGCAAAGCT TTCACTCGCC
AACCCTAAAA GCACCACGGG AAGCGATAAG CAAAACTGGG AAACCTTTTA G
|
|---|
| Protein sequence | MQHTKKMKLG TQVGSGFAIV IIIGLLVAIF GRMHLVGLGN TTDRLAKHHL ANLIVLQELK
DNLNVTIKAT LRMLIATEQK VLEDNQKLIE TTSAKNTQLV TQLETNLRAT EVRNILGELQ
QNRTEFARVG RQAVALSLSN RQAESIELVK TQLEPIQTKL FNNLNTMIQL QRDYTTQTAT
NAIEESYYDG NSLLILAVIA SLFGAGIAWL ITRHIKKQLG GEPAYATQVT QEIAQGNLAI
PVDLASGDNT SLLFAMNNMR KSLSSIVEQV RESSESIATG ARQIAAGSAD LSQRTEEQAA
NLQQTAASTE EMSQTVRQNT DTVRNAAQLA QAASNTAAKG GEAVGNIVVT MKEITDSSHK
INDIISVIDG IAFQTNILAL NAAVEAARAG EQGRGFAVVA GEVRSLAQRS ATAAKEIKEL
IGHSVEKVET GSALVSDAGT TIEELVRQAR HVADLINEIG ITTQEQESGV SQIHEAVNQL
DQVTQQNAAL VEQSASAADS LSEQAAHLVE LMKVFIVEGG APQRLAPQLK RPDSAKLSLA
NPKSTTGSDK QNWETF
|
|---|
| |