| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0051 |
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| Symbol | |
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| ID | 8130951 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012917 |
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| Strand | - |
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| Start bp | 56584 |
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| End bp | 60897 |
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| Gene Length | 4314 bp |
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| Protein Length | 1437 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 644863321 |
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| Product | YD repeat protein |
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| Protein accession | YP_003015649 |
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| Protein GI | 253686459 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCTGAGTG ATATTCTGAA CCGCGTTGCC CGCGTCGGTG CTATGCACGC AGGCAAAGGC
CCGACGCCGC CTGCCGAACG TCCTCAACCG GGCCAGGGAA AAGCGCCGAC ATCACCGGGC
AAAACCATCA AGCACAAAAG CTTTCTCGGC GCGCTGGCCG GCGCTATCGC TGGGGCGGTC
GTTGCCGCGG TGGTTTTTGC CGCCGCAGCG GCTGTCGCAG GAGCGATTGC CGTCGCCGTT
GTCGGGACGG GCGGCATGGG TGCGGCGCTG GTTGTCGGGG CAGTTAAACT GGCGGTGGGA
TTTGGTGCAG TCAGCCTATT GGGAGGGCTA ATTAGCAGCG TCTCCAGCAA GGTTTCCGCC
ATGGTAGACA GCGGATCCCC GCCGTTTGGG CCGGTTTCTT CAGGCTCAGG AACGGTGTTT
GCGGAGAAGC AGAAGATTTC CCGCGCCGAG GTTGACACGG TCGCCTGTAC CAAACACAAC
TCTCCTCAAT TGATTGCGCA AGGCAGTGAG ACCGTTTACG TCAATGGCTC TCCGGCTGCG
CGTATCGACG ATAAAACCGT CTGTGGTGCC ACTATCAAGG AAGGAGCATC AACCGTCTTT
TTTGGTTCTG GACAGCAAAC CTGCCTGAAG ATTAGTGACG AATTCAGTTG GTGGGAAAAA
GCGCTACTGA TCGCGGTGGA GTTTCTGGTG CCGCCCAGCC GGGGCATGTT CAAAGGGCTA
GGCAAGCTGT TTACCCGTGG CCCTACTGCC GTGCTCAAAG GCATTCGGAT GGGGGCGCTA
AGAACAGCGG TAGGGCTACG AAAAGCGGTT CGCTGTGCCA GCAAAGGCTT TAAAAATAAC
AAAGGGTTAG CACGCATTAA GGAAGCCACT CGGGGCTTTC TGAAAGATCC GGTCTACATT
CCCAGCGGGA ATGTCATCGA AATGCGTCAG GATATTGAAC TAGGGCAAAC ACTCCCCCTA
CTTTTTGAGC GCACGTATCG ATCCTCTTCC ACCCATACCG GGTTGCTGGG GCGCGGCTGG
TATGACACTT GGAGCGAAAC AGCGCAGGTC AGCCGTGATG GCCTCAATAC CCACGTTGTC
ATCACGCTGG CGCAGGGATA TGACATCGAT TTTACGTTCC ATCAGGATGT GCAGTCGGTA
TTTTGTCCGC TCTATCCGGC TTTTACCCTG TATCGGCGGG CAAAGGGCTT TAGCCTGTGG
GATCGCGACA GTCTCACCTG GCGTGAATTC GATGTGCCTC AGGGCGATCG GCTACTTCTG
TCTTCGATAC ATGACCCGCA TGACAACCGC ATTACCCTGA TCCGCGATCC AAAAGGCTAT
CTGCGCAAGA TCCGCCACAG CGACGATATC GAGCTACTGT TGGTGTGGCG AGGGGAATCT
CTGCACCAGA TACAGCGTAT TGATACTGGG CAGAAAACCC TGCTGGCTGA ATACCGACAG
GACGAACAGG GTCGCCTGAT CGAAGCCGAT GCCGCCCATG CCTATCACCT GTTTTACGAC
TACGACAGCG AAAACCGACT CACCCGCTGG CATGACAACG ACCAGACCTG GGCGCGTTAC
GAATATGACT ATCAAGGCCG CTGCGTCTAT ACCACCTGTG CCGACGGCTA CTTGACGGCG
CATTTTGAGT ATCTCGACGA TCGCGTGGTG ATGACCGACG GACTAGGTCA GCGCAGCGAA
TTTGGTTTTA ACGCGCTGTC GCTAATGAGT TGGGAGAAAT CCCCGTTAGG GCGCATCACC
CGCTACGACT ACGACGACCA CGGCAACTTG CTACGTGAGA TTTCCCCAGC TGGCCGGGTG
GTTGAGTTCA GGTATCTGGA CGATAGCGGT CTGGTCAGCG CCTTCACTGA CGGCAGCGGC
CATACCTGGG CCTATGACTA CGACGAGGCG CAGCGGTTAT GTGGCATCAC CGATCCGCTG
GGGCGCATCT GGCAATGGGC GTTCGATGAG ACAGGCAACC CGGAGAAACT CACGGGACCA
GATACCCGTG AAGTCCGATT TACCTGGAAC CGCCATGGCC TGCTGACGCA GGTAAGCGAT
CAGGCCGGCG AGGTTCAGGC GCGACTGCGT TACGATCATC GTCAACGATT GCTGAGCGCC
AGCGATGCGC TGGGGCGCAC CCAGCAGTTG CGCTATGACC AGCAGGACAG AGTGGTGCAG
TGGCAGCGGC CGGACGGCGC ACAATACAGG CTAGGCTATC GTCGTGCGAG CTGGAAGCTA
CCGGAGCAAC TCGTCCGTCC TGATGAGAAA GAAGAAAAAC GCCAGTACGA CAAGCATAAC
AACCTGCTGA GCTATGTGGA CGGCAACGGC GCACTATGGC GACAAAGCTA CGGTCCCTTT
GACCTGCTCA CCTCACGCAC GGATGCACAG GAGCGTACCT GGCGTTACGA GTATGACAAA
GAGAGCCAGC AGCTGGTCGC CGTTATCGCC CCAGACGGCA GCCGCTGGCA ATGGTGGCTG
GATGCCGATG CACGAGTTAT CCGCGAGCGG GATATGGCAG GGACCGACAC CCACTACACC
TACGACGAAG ACGGCCACTG CATCGCCATC CGTAATGGCG AAGGCGAAAC TCGTCACTTT
CTGTATGACG GACGTGGGTT GCTCATTAAA GAAACTGCGC CGGACGATAC CCAGTATTAC
CGCTATGACG CCGCAGGCAG GCTGACCGAG GTCACCTCTA CCACCAGTCA CGTCCAGTTG
GAATATGACC TCCGTGACCG GGTGGTGCGG GAGTGGCTGA ACGGCACCTT GCTCACCCGA
CAGTTTGACG ATACCGCACG CACTGTGACG CGGACACTGG TCTGGGAAAA CGAGAGCGAC
AACGCGCTGG TCAGCGCCTT CAGCTACAGC GCGGCAGGTG AACTGCAACA GGTGCAGTTG
CCGGACGGTG CGGAGCTCAC CCTTGCCCAT GATGCCGCCG GACGGGAATC GTCGCGTTCA
GGCGGGGCGT TCGTCCAACA CCGCGAATAT GACGTGATGG GCTGGTTGGC GCGCGAGATG
AGCGGTCAGC AGCAGGACGG TCGACTCCAT GCCACACAGA CAAAGGAATA CCTGTACGAC
GGTGCGGGCA ATCTGGCTGG CGTTCGCCAC AATCGTGAAA CCCGGGGCTA CCGTCTGGAT
GCCACCGGGC GGGTGCTGTC CGTCCTGAGC GGTGGCGCAG GACGGACGGT CGATACTGAC
GAAGCCTACC GCTATACACG CAACGGTCTG CCGCAGGAGA CTTCCCGACT CACCGAATGG
CAGGCGGGTA GGCTGACTCA GCACGACGAT ACCCATTACC AGTACGACAA AGCCGGGCGA
CTCATCCGTA AACAGGTGGT TCAGCCGGGC TACCGCCCAC AGGTCTGGCA CTATCGCTGG
GACAGCCGTA ACCAGCTCCG GGTTGTCGAC ACCCCGACGG GCGAACGCTG GTTCTACCGC
TATGACCCGT TCGGACGGCG CACCGGCAAA CGCTGTGAGC AGACACAGGA CGATATCCGC
TACCTGTGGG ACGGCGACCA AATCGCCGAG GTACGGCATT ATCGCAACGG TAAACAGATT
GCCCGTCGCC ACTGGGTACA CAACGGCTGG GAGCTGCTGG TTCAGCAACG GCAGAATACT
GACGGACGCT GGGAAACCGA TTTTGTCACC AGCAGCCAGA ACGGTGAACC ACAGGCCCTG
TACAAACCCG ACGGCACCCT GCGCTGGCAG GCACCGAAAA GCACCCTCTG GGGCCAGCGA
CCAGGCTCCA CGGAAGACTC TGCCGACCCG GGACTTGCCT TTGCCGGACA GTACCGTGAC
AGCGAAAGCG GGCTATGTTA TAACCGTTTT CGGTACTACG ATCCGAATGG TGGATGCTAC
GTCTCGCCTG ACCCGATAGG GGTGCTGGGG GGAGAAAGTA ATTATGCTTA TGTGCCGAAT
CCCAATACAT GGGTTGATCC GTTTGGGTTG GCTGGGTGTT CTAAAGAACT AGCTCAAAGA
AAAGCACAAG AGCTTCGTGA TAGTGCCACA TCAAATACTC AACGAAGTAA GTTACCCAGA
GCAACGTCTG CGGTAGTCGA TAAGGCCACA GGTAAAGTTT ATTATGGTTT CAGTGGGCGA
CCTCTTCCTA GTACTATTCA CCCTCATTTA GCAGAAAGAA TGCCTAGTCC TAGCTTAGAA
AGATGGCCGG TTCAAAACTG TGCAGAATTC AAAGGTGTCA ATCAGGCTTT GCTGGATGGA
GCTAGGTTAG AAAACCTGGA GGTTCATACA GTGAAGACTA TATCAGGTGA GGCATTTCCA
ATGTGTTCAA ATTGCCAAAC TACCATATTT GGTACGATAG TTACGAGTGG ATAG
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| Protein sequence | MLSDILNRVA RVGAMHAGKG PTPPAERPQP GQGKAPTSPG KTIKHKSFLG ALAGAIAGAV
VAAVVFAAAA AVAGAIAVAV VGTGGMGAAL VVGAVKLAVG FGAVSLLGGL ISSVSSKVSA
MVDSGSPPFG PVSSGSGTVF AEKQKISRAE VDTVACTKHN SPQLIAQGSE TVYVNGSPAA
RIDDKTVCGA TIKEGASTVF FGSGQQTCLK ISDEFSWWEK ALLIAVEFLV PPSRGMFKGL
GKLFTRGPTA VLKGIRMGAL RTAVGLRKAV RCASKGFKNN KGLARIKEAT RGFLKDPVYI
PSGNVIEMRQ DIELGQTLPL LFERTYRSSS THTGLLGRGW YDTWSETAQV SRDGLNTHVV
ITLAQGYDID FTFHQDVQSV FCPLYPAFTL YRRAKGFSLW DRDSLTWREF DVPQGDRLLL
SSIHDPHDNR ITLIRDPKGY LRKIRHSDDI ELLLVWRGES LHQIQRIDTG QKTLLAEYRQ
DEQGRLIEAD AAHAYHLFYD YDSENRLTRW HDNDQTWARY EYDYQGRCVY TTCADGYLTA
HFEYLDDRVV MTDGLGQRSE FGFNALSLMS WEKSPLGRIT RYDYDDHGNL LREISPAGRV
VEFRYLDDSG LVSAFTDGSG HTWAYDYDEA QRLCGITDPL GRIWQWAFDE TGNPEKLTGP
DTREVRFTWN RHGLLTQVSD QAGEVQARLR YDHRQRLLSA SDALGRTQQL RYDQQDRVVQ
WQRPDGAQYR LGYRRASWKL PEQLVRPDEK EEKRQYDKHN NLLSYVDGNG ALWRQSYGPF
DLLTSRTDAQ ERTWRYEYDK ESQQLVAVIA PDGSRWQWWL DADARVIRER DMAGTDTHYT
YDEDGHCIAI RNGEGETRHF LYDGRGLLIK ETAPDDTQYY RYDAAGRLTE VTSTTSHVQL
EYDLRDRVVR EWLNGTLLTR QFDDTARTVT RTLVWENESD NALVSAFSYS AAGELQQVQL
PDGAELTLAH DAAGRESSRS GGAFVQHREY DVMGWLAREM SGQQQDGRLH ATQTKEYLYD
GAGNLAGVRH NRETRGYRLD ATGRVLSVLS GGAGRTVDTD EAYRYTRNGL PQETSRLTEW
QAGRLTQHDD THYQYDKAGR LIRKQVVQPG YRPQVWHYRW DSRNQLRVVD TPTGERWFYR
YDPFGRRTGK RCEQTQDDIR YLWDGDQIAE VRHYRNGKQI ARRHWVHNGW ELLVQQRQNT
DGRWETDFVT SSQNGEPQAL YKPDGTLRWQ APKSTLWGQR PGSTEDSADP GLAFAGQYRD
SESGLCYNRF RYYDPNGGCY VSPDPIGVLG GESNYAYVPN PNTWVDPFGL AGCSKELAQR
KAQELRDSAT SNTQRSKLPR ATSAVVDKAT GKVYYGFSGR PLPSTIHPHL AERMPSPSLE
RWPVQNCAEF KGVNQALLDG ARLENLEVHT VKTISGEAFP MCSNCQTTIF GTIVTSG
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