| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PC1_0037 |
|---|
| Symbol | |
|---|
| ID | 8130937 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pectobacterium carotovorum subsp. carotovorum PC1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012917 |
|---|
| Strand | + |
|---|
| Start bp | 41490 |
|---|
| End bp | 42902 |
|---|
| Gene Length | 1413 bp |
|---|
| Protein Length | 470 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 56% |
|---|
| IMG OID | 644863308 |
|---|
| Product | anion transporter |
|---|
| Protein accession | YP_003015636 |
|---|
| Protein GI | 253686446 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0471] Di- and tricarboxylate transporters |
|---|
| TIGRFAM ID | [TIGR00785] anion transporter |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGCGA ATAACAGCAG GTTTATAAAG CTTCTAATTA TCCTTTGTAT TGCCGGTGGC
TTATGGTTAT TGCCGGTTCC TGATGGGGTT AAACCCGATG CCTGGCATCT GATGGCGATT
TTCATTGCCA CCGTTGTCGG TCTGATTCTC TCTCCTTACC CGCTTGGCGC GATGGCGATG
TTCAGCCTGA CCTCGGTCGC CATATTAGGG TTATTGTCCA TTAAAGATGT GCTGGCGGGC
TTTAGCGATC CCACCATTTG GATGATCGCC TGCGCCTTCT TTATCTCGCG CGGCTTTATC
AAAACCGGTT TTGGTCGGCG TATTGGTCTG CTGTTCATCA GCAAGCTGGG GAACAGCTCG
CTCGGTCTGG CGTATGGTCT GGTGTTTACC GACCTGCTGT TTGCCCCGGC TATGCCTTCC
ACATCTGCAC GCTGCGGCGG GATTATCACA CCGCTGTTCC GCTCGATTGC CGAAGCCTAT
GACTCCACAC CGGAAAAAGG CACGCAGCGC CGCATTGGTG CGTTCCTGGT GCAATCTATT
TTCCAATGTA ACGCCGTGAC CTCCGCGATG TTCATGACCT CCATGGCGGG TAACCCGATG
GTGGCGAAAC TGGCTTCCCA GTTTGGTATT CACATCAGTT GGACGGACTG GGCATTGGCG
ACATTGCTGC CGGGTTTCCT GTCGTTGGCG CTGATTCCTT ATCTGATCTA CCGCTTTTAT
CCGCCTGAAT TGAAGAAAAC CTCGGAAATG CGTGCCATCG CCGTCGAAAG ACTGCGTGAA
ATGGGCAAAA TGACCCGCGA CGAGTGGGTG GTACTGGGCG TGTTCCTGGG GCTGGTGACC
TTCTGGGTGC TGGGCTCTAC ACTGAATATC GATGCGACCC TGACCGCACT GGCTGGCCTG
AGCGTGCTGT TGCTCAGCCG TGCGCTGAGC TGGGACGATG TGGTGGGTGA GAAAGAAGCC
TGGCACACCG TGGTGTGGTT TGCTGTGCTG ATGACGCTGG CGGGTCAGCT TAACAAAATG
GGTCTGATTG CCTGGCTGGG TGGTCTGGCT GGCAGCGCGG TGAGTGGCAT GCACTGGCTG
CCGATGCTGG GTCTGCTGCT GTTGGTTTAC TACTACAGCC ACTATCTGAT GGCGAGTGCG
ATTGCCCATA TCAGCGCCAT GTATGCGATC TTCGTCTCTA TCGCGTTGGC TGCCGGTGCG
CCGCCGATGC TGACCGTGCT GGTGTTCGGT ATCTTCAGTA ACCTGTTTAT GTCTACGACG
CACTACTCCA GCGGCCCGGC TCCGATTCTG TTCGGTACAG GCTACATGCC GCTGGGAACC
TGGTGGAAGA TCGGTTTCTC CATCAGCCTG GTCATCATCC CTATCTGGCT GGGTGTTGGT
AGCATGTGGT GGAAAGTGCT CGGCTTCTGG TAA
|
|---|
| Protein sequence | MSANNSRFIK LLIILCIAGG LWLLPVPDGV KPDAWHLMAI FIATVVGLIL SPYPLGAMAM
FSLTSVAILG LLSIKDVLAG FSDPTIWMIA CAFFISRGFI KTGFGRRIGL LFISKLGNSS
LGLAYGLVFT DLLFAPAMPS TSARCGGIIT PLFRSIAEAY DSTPEKGTQR RIGAFLVQSI
FQCNAVTSAM FMTSMAGNPM VAKLASQFGI HISWTDWALA TLLPGFLSLA LIPYLIYRFY
PPELKKTSEM RAIAVERLRE MGKMTRDEWV VLGVFLGLVT FWVLGSTLNI DATLTALAGL
SVLLLSRALS WDDVVGEKEA WHTVVWFAVL MTLAGQLNKM GLIAWLGGLA GSAVSGMHWL
PMLGLLLLVY YYSHYLMASA IAHISAMYAI FVSIALAAGA PPMLTVLVFG IFSNLFMSTT
HYSSGPAPIL FGTGYMPLGT WWKIGFSISL VIIPIWLGVG SMWWKVLGFW
|
|---|
| |