| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_64230 |
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| Symbol | retS |
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| ID | 4383325 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | + |
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| Start bp | 5722815 |
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| End bp | 5725643 |
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| Gene Length | 2829 bp |
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| Protein Length | 942 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 639327784 |
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| Product | RetS (regulator of exopolysaccharide and Type III secretion) |
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| Protein accession | YP_793322 |
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| Protein GI | 116053004 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG0642] Signal transduction histidine kinase |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0403381 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 61 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGTACGGC TTCGGATCGC CATAGGACTA CTCGTCAGCT TCCTGCTGCT TCTGCTCGGT
CCGATGTCGC CGGCGGTCGC GGACGACGCC GGCGTTTCCA GCGTTCCCCT GCAAACCACC
GCCACTACTC CCAGCGCCAA CCAGAACTGG CGCCTGCTGC GCGACGAGAG CGCGCAACTG
CGGATCGCCG ACGTCCTCCA GCGCAAGGAG CAGTTCCGCC CGCTGGCCAA GCGCTCCTTC
ATCTTCCCCG CCAGCCCCCA GGCGGTCTGG CTGCAGGTCC AGCTTCCCGC GCAGAAGGTG
CCGAGCTGGC TGTGGATCTT CGCCCCGCGG GTGCAGTATC TGGACTACTA CCTGGTGCAG
GACGGCCAAC TGGTGCGGGA CCAGCACACC GGCGAGTCGC GACCGTTCCA GGAGCGCCCG
CTGCCCTCGC GCTCCTACCT GTTCTCGCTG CCGGTCGACG GCAAGCCGAT GACCCTGTAC
GTGCGGATGA CCTCCAACCA TCCACTGATG GCCTGGTTCG ACCAGATCGA CGAAGCCGGC
CTGGTCGGCC TGGAGAAGCC CGCCTACGCC TTCGGCATGC TGCTCGGCGG CATGCTCCTG
CTGCTGATGT ACAACCTGAT CCGCTTCGCC TACTCGCGCA GCGCCAGCAG CCTGTGGCTG
GCGGCGGTGC ACGCGGCGCT GGCGGTCTGC GCCGCGGCGA ACCTGGGGCT GGTGGCGTTC
TGGCTGCCGG GACTCAAGTT CAACCAGTCG CTGACCGCCG ACCTCGGCGC CCTCGGCGCC
GCGGTGAGCC TGCTGTGGTT CGCCTGCAGC TTCTTCCGCG GCACTGCGGA AAGCCGCCTG
AACCGCCTCC TGCAAGGCGA GGCGCTGTTG ATCCTGGCGG TCGGCGCGAT CATCGCCTTC
ACCCAGCAAC TCTGGTTCAG CTGGCTGATC TACCTGCTGG TGATCCTCAG TTCGCTCAGC
GTCCCGCTGG TCGCGGCCTG GCACTGGTAT CGCGGCTACC AGCCGGCGCG CCTGATCGTT
GCCGGGATGA TCGTGTTCAA CGCCGGCTTC ATGGTGTTCC TGCCGGTACT GTTCGGCACC
AAGCAACTCG ATCCGGGCTG GCTGGTGCTC GGCGTGTTCA GCTTCGCCAC CCTCGCCGGG
CTGGTCCTGA GCGTCTCGCT CACCGAACGC CAGCGGCTGA TCCAGCAGCT CAACCTGCAA
CAGCGCACCA GCGAGGCGGC GCACACCGCG GAATTGCAGA CCAAGGCCGA GTTCCTGGCC
AAGATCAGCC ACGAGATCCG CACGCCCATG AACGGCGTGC TGGGGATGAC CGAACTGCTC
CTCGGCACCC CGTTGTCGGC GAAGCAGCGC GACTACGTGC AGACCATCCA CAGCGCCGGC
AACGAGCTGC TCACGCTGAT CAACGAGATC CTCGACATCT CCAAGCTGGA GTCCGGGCAG
ATCGAGCTGG ACGAAGTGCA GTTCGACCTC AACGCGCTGA TCGAGGACTG CCTGGATATC
TTCCGGGTCA AGGCCGAGCA GCAGCGCATC GAGCTGATCA GCTTCACCCA GCCGCAGGTG
CCGCGGGTCA TCGGCGGCGA TCCGACGCGC CTGCGCCAGG TGGTCCTGAG CCTGCTGGAC
AACGCGTTCA AGCAGACCGA GGAAGGCGAG ATCCTGCTGG TGGTGGCCCT CGACGACCAG
GGCGAGACGC CACGCCTGCG CATCGCCGTG CAGGACAGCG GCCACCCGTT CGACGCCAAG
GAGCGCGAGG CGCTGCTCAC CGCCGAGCTG CACAGCGGCG ACTTCCTTTC CGCCAGCAAG
CTCGGCAGCC ACCTCGGCCT GATCATCGCC CGCCAACTGG TGCGGCTGAT GGGCGGGGAG
TTCGGCATCC AGTCCGGCAG CAGCCAGGGC ACCACCCTGT CGCTGACCCT GCCGCTCGAC
CCGCAGCAAC TGGAGAACCC CACCGCCGAC CTCGACGGCC CGCTGCAGGG CGCCCGGCTG
CTGGTGGTGG ACGACAACGA AACCTGCCGC AAGGTGCTAG TGCAGCAGTG CAGCGGCTGG
GGCCTGAACG TCAGCGCGGT GTCGTCCGGC AAGGAGGCGC TGGCCCAGTT GCGCACCAAG
GCGCACCTGC GCGAGTACTT CGACGTGGTC CTGCTCGACC AGGACATGCC CGGCATGACC
GGCATGCAAC TGGCGGCGAA GATCAAGGAA GACCCCAACC TCAACCACGA CATCCTGCTG
ATCATGCTCA CCGGGATCAG CAACGCGCCG AGCAAGATCA TCGCCCGCAA CGCCGGGATC
AAGCGCATCC TGGCCAAGCC GGTGGCCGGC TACACGCTGA AGGCGACCCT CGCCGACGAA
CTCGCCCAGC GCGGCGTCAG CGGCGTCACC AACTACCTGC AACCGGCCAA GGAAGCGCAG
GCGCCGAGCC TGCCGAGCGA TTTCCGGATC CTCGTCGCCG AGGACAACAG CATCTCCACC
AAGGTCATCC GCGGCATGTT GAACAAGCTC AACCTGCAGC CGGACACCGC CAGCAACGGC
CAGGAGGCGC TCAGCGCGAT GAAGGCGACC CAGTACGACC TGGTGCTGAT GGACTGCGAG
ATGCCGGTGC TCGACGGCTT CTCCGCCACC GAACAGCTAC GCGCCTGGGA AGCCCACGAA
CAGCGCCCGC ATACCCCGGT GGTGGCGCTC ACCGCGCACA TCCTCAGCGA ACACAAGGAA
CGCGCGCGGC TGGTCGGCAT GGACGGGCAC ATGGCCAAGC CGGTGGAGCT GTCGCAATTG
CGTGAGCTGA TCGCCTACTG GGTCGGCGAA CGCGATCGCC GCCGCCAGGG CGACGCCCTG
CCCTCCTGA
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| Protein sequence | MVRLRIAIGL LVSFLLLLLG PMSPAVADDA GVSSVPLQTT ATTPSANQNW RLLRDESAQL
RIADVLQRKE QFRPLAKRSF IFPASPQAVW LQVQLPAQKV PSWLWIFAPR VQYLDYYLVQ
DGQLVRDQHT GESRPFQERP LPSRSYLFSL PVDGKPMTLY VRMTSNHPLM AWFDQIDEAG
LVGLEKPAYA FGMLLGGMLL LLMYNLIRFA YSRSASSLWL AAVHAALAVC AAANLGLVAF
WLPGLKFNQS LTADLGALGA AVSLLWFACS FFRGTAESRL NRLLQGEALL ILAVGAIIAF
TQQLWFSWLI YLLVILSSLS VPLVAAWHWY RGYQPARLIV AGMIVFNAGF MVFLPVLFGT
KQLDPGWLVL GVFSFATLAG LVLSVSLTER QRLIQQLNLQ QRTSEAAHTA ELQTKAEFLA
KISHEIRTPM NGVLGMTELL LGTPLSAKQR DYVQTIHSAG NELLTLINEI LDISKLESGQ
IELDEVQFDL NALIEDCLDI FRVKAEQQRI ELISFTQPQV PRVIGGDPTR LRQVVLSLLD
NAFKQTEEGE ILLVVALDDQ GETPRLRIAV QDSGHPFDAK EREALLTAEL HSGDFLSASK
LGSHLGLIIA RQLVRLMGGE FGIQSGSSQG TTLSLTLPLD PQQLENPTAD LDGPLQGARL
LVVDDNETCR KVLVQQCSGW GLNVSAVSSG KEALAQLRTK AHLREYFDVV LLDQDMPGMT
GMQLAAKIKE DPNLNHDILL IMLTGISNAP SKIIARNAGI KRILAKPVAG YTLKATLADE
LAQRGVSGVT NYLQPAKEAQ APSLPSDFRI LVAEDNSIST KVIRGMLNKL NLQPDTASNG
QEALSAMKAT QYDLVLMDCE MPVLDGFSAT EQLRAWEAHE QRPHTPVVAL TAHILSEHKE
RARLVGMDGH MAKPVELSQL RELIAYWVGE RDRRRQGDAL PS
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