| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_63120 |
|---|
| Symbol | |
|---|
| ID | 4383223 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5634070 |
|---|
| End bp | 5635119 |
|---|
| Gene Length | 1050 bp |
|---|
| Protein Length | 349 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 639327699 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_793238 |
|---|
| Protein GI | 116052921 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0421] Spermidine synthase |
|---|
| TIGRFAM ID | [TIGR00417] spermidine synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.00932566 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGGCGG AGGTCGCCGC CGGGTTGCCG CCGCTGCCGC CGAACCACTT CTATTTCTAT
CCGCCGGACC CGCTGCTGGA AGGCGACGGC GCGATCACCG CGATCGAGGA CAGCGACCCC
TTCGACCAGT ACGTCTACCG CCTGCGCCGG GTGCTCTACC AGGGCCGCAC GCGCTGGCAG
AACGTGCTGA TCGCCGACAC CTACAACTAC GACCGCGTGC TGATGCTCGA CGGCGCGATC
CAGAGCGCCG AGAGCGATGA GTCGCTGTAC CACGAGCTGC TGGTGCAGCC GGCCATGCTC
GCCCACGACG AGCCGCGCGA CGTACTGATC ATCGGCGGCG GCGAAGGCGC CACCCTGCGC
GAGGTGCTCT CCCATGCCAG CGTGCGGCGG GCGGTGATGG TCGATCTCGA CCGGGAGCTG
GTGGAACTGT GTCGCGAACA CCTGTTCCAG TGGCACCAGG GCGCCTTCGA CGACCCACGC
TGCGAACTGC TCGCCGAGGA CGGCCGGGCC TATCTCGAGC GCGACCCGTC GCTCTATGAC
GTGGTCATCA TCGACGTCGT CGACATGCTC GACAACGGCC CGGCCCAGGC TCTCTATACC
CGCCAGTTCT ACGAGCTGCT GCATTCGCGC CTGCGACCGG GCGGGGTGGT CGCGGTGCAG
GGGCTGGAGT TCTCCCACAG CGACGACAAG CCCCACGCGG CCCTCGCCCG TACCCTGCGC
AGTGTCTTCT CCCAGGTCCA CAGCTACCGC GCCACGGTGC CCTCGTTCCT CTCCTCCTGG
GGCTTCCTGC TGGCTTCCGA CTGGCTCGAC GCGAACCACT GGCAGGCCGA GGACATCGAC
CGACGCATCG AACGCAAGCT CGGCCCGCTG TGGCTCGACC ACCTCGACGG CGACTACCTC
AAGGCCTGCT TCGTGATGGA CCGGGAAACC CGCTTCCTGC TCGCCCAGCC GGGACCGGTA
CTGGAAGACG GCGTACCCTT CGTCGCACCG CCGGATATCG AGGAGATCGA GTTCGGCCCG
GCACAATTGC CGGCCCTGGC GAGGACCTGA
|
|---|
| Protein sequence | MPAEVAAGLP PLPPNHFYFY PPDPLLEGDG AITAIEDSDP FDQYVYRLRR VLYQGRTRWQ
NVLIADTYNY DRVLMLDGAI QSAESDESLY HELLVQPAML AHDEPRDVLI IGGGEGATLR
EVLSHASVRR AVMVDLDREL VELCREHLFQ WHQGAFDDPR CELLAEDGRA YLERDPSLYD
VVIIDVVDML DNGPAQALYT RQFYELLHSR LRPGGVVAVQ GLEFSHSDDK PHAALARTLR
SVFSQVHSYR ATVPSFLSSW GFLLASDWLD ANHWQAEDID RRIERKLGPL WLDHLDGDYL
KACFVMDRET RFLLAQPGPV LEDGVPFVAP PDIEEIEFGP AQLPALART
|
|---|
| |