| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_58770 |
|---|
| Symbol | pilD |
|---|
| ID | 4382650 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5237206 |
|---|
| End bp | 5238078 |
|---|
| Gene Length | 873 bp |
|---|
| Protein Length | 290 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 639327323 |
|---|
| Product | type 4 prepilin peptidase PilD |
|---|
| Protein accession | YP_792875 |
|---|
| Protein GI | 116052560 |
|---|
| COG category | [N] Cell motility
[O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1989] Type II secretory pathway, prepilin signal peptidase PulO and related peptidases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 0.896389 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 45 |
|---|
| Fosmid unclonability p-value | 0.522546 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACTCC TCGACTACCT GGCCAGCCAT CCGCTGGCCT TTGTCTTGTG CGCCATCCTC
CTTGGCCTGC TGGTCGGCAG CTTCCTCAAC GTCGTCGTGC ATCGCCTGCC GAAGATGATG
GAGCGCAACT GGAAGGCCGA GGCCCGCGAA GCGCTCGGGC TGGAGCCGGA ACCCAAGCAG
GCGACCTACA ACCTGGTGCT GCCGAATTCG GCGTGCCCGC GCTGCGGCCA CGAGATCCGC
CCCTGGGAAA ACATCCCGCT GGTCAGCTAC CTGGCGCTGG GCGGCAAATG CTCGTCCTGC
AAGGCCGCCA TCGGCAAACG CTACCCCCTG GTGGAACTGG CCACCGCGCT GCTTTCTGGC
TACGTCGCCT GGCATTTCGG CTTCACCTGG CAGGCGGGCG CGATGCTCCT GCTGACCTGG
GGTCTGCTGG CGATGAGCCT GATCGATGCC GATCACCAAC TGCTGCCGGA CGTGCTGGTG
CTGCCGCTGC TCTGGCTGGG CCTGATCGCC AACCATTTCG GCCTCTTCGC CAGCCTCGGC
GATGCGCTGT TCGGCGCGGT GTTCGGCTAC CTGAGCCTGT GGTCGGTGTT CTGGCTGTTC
AAGCTGGTGA CCGGCAAGGA GGGCATGGGC TACGGCGACT TCAAGCTGCT GGCCATGCTC
GGTGCCTGGG GCGGCTGGCA GATCCTGCCG CTGACCATCC TGCTGTCGTC GCTGGTCGGG
GCGATCCTCG GGGTGATCAT GCTGCGCCTG CGCAACGCCG AAAGCGGCAC GCCGATCCCC
TTCGGTCCCT ATCTGGCGAT TGCCGGGTGG ATTGCTTTGC TCTGGGGTGA TCAAATAACC
CGGACCTATC TGCAATTCGC CGGATTCAAA TGA
|
|---|
| Protein sequence | MELLDYLASH PLAFVLCAIL LGLLVGSFLN VVVHRLPKMM ERNWKAEARE ALGLEPEPKQ
ATYNLVLPNS ACPRCGHEIR PWENIPLVSY LALGGKCSSC KAAIGKRYPL VELATALLSG
YVAWHFGFTW QAGAMLLLTW GLLAMSLIDA DHQLLPDVLV LPLLWLGLIA NHFGLFASLG
DALFGAVFGY LSLWSVFWLF KLVTGKEGMG YGDFKLLAML GAWGGWQILP LTILLSSLVG
AILGVIMLRL RNAESGTPIP FGPYLAIAGW IALLWGDQIT RTYLQFAGFK
|
|---|
| |