| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_58420 |
|---|
| Symbol | |
|---|
| ID | 4382623 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5203987 |
|---|
| End bp | 5205588 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 639327294 |
|---|
| Product | putative binding protein component of ABC dipeptid |
|---|
| Protein accession | YP_792847 |
|---|
| Protein GI | 116052533 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 0.851894 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 61 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCCATC CGTTGCTCCG ACACCTGCCC CTGGCCCTGG CCCTGGCGCT ATGCGCCGCC
GGCGCGGCCC AGGCGAAGAA CCTGGTGGTC TGCACCGAGG CCAGCCCGGA AGGCTTCGAC
ATCGTCCAGT ACACCGGCGC GGTGACCGCC GACGCCTCCG CGGAAACCGT GTTCAACCGC
CTGCTCGCCT TCCGCCCCGG CACCACCGAG GTGATCCCGG GGCTGGCCGA GCGCTGGGAC
GTCAGCGCCG ACGGACTGAG CTATACCTTC CACCTGCGCC CCGGCGTGAA ATTCCATACC
ACCGACTACT TCAAGCCGAC CCGGAGCCTG AATGCCGATG ATGTGCTGTG GACCTTCCAG
CGCGCCCTCG ATCCGAAGCA TCCCTGGCAT GCCTCGGCGC TGCGCGGCTA CGCCTACTTC
GACGCGATGG GCATGGGCGA GCTGATCAAG TCGGTGGAAA AGGTCGACGA GCTCACCGTG
CGCTTCGTCC TCAACCGTCC CGAAGCGCCG TTCCTGCGCG ATATGGCGAT GCCCTTCGCG
TCCATCTATT CCGCCGAGTA CGGCGACCAG TTGCTCGCCG CCGGCAAGCA GGGCCAGTTG
AACAACCAGC CGATCGGCAC CGGGCCGTTC GTCTTCAAGC GCTACGCCAA GGACGCCCAG
GTCCGCTACA CGGCGAACCC GGACTACTAC GCCGGCAAGC CGCCGATCGA CAATCTGGTG
TTCGCCATTA CCCTCGATCC CAACGTGCGC ATGCAGAAGG TCCGTGCCGG CGAGTGCCAG
GTCTCGCTGT ACCCGAAACC GGAGGACGTG CCGCGCCTGA AGCAGGACCC GAACCTGGCG
GTGGACGAGA TCGATGCCCT GCTGACCACC TACATTGCCA TCAACACCCA GCACAAGCCG
CTCGACGACC CGCGCGTGCG CCAGGCGATC AACCTCGCTC TGGACAAGAA GGCCATGCTC
GACGCGGTGT TCGGCCCCGG CGCGGCCAGT CCGGCTGTCG GTCCCTATCC CCCGACCCTG
CTCGGCTACA ACCATTCGAT CCAGGACTGG CCGCACGATC CCGAACGCGC CAGGGCGCTG
CTCAAGGAAG CCGGTGCGGA AAATCTCAGG ATCACCCTGT TCATTCGCAA CGGCACCTCG
CCTACCATCC CCAACCCCGC CCTGGCAGCA CAGATGCTGC AAGCAGACCT GGCCAAGGCC
GGCATCCAGC TGACCATCCG TTCCCTGGAG TGGGGCGAGC TGCTCAAGCG TTCGAAGGCC
GGCGAGCACG ACCTGTCGCT GCTTGGCTGG GCCGGCGACA ACGGCGACCC GGACAACTTC
CTCAGCCCGA ACCTGAGCTG CGCCGCCGCC GAGTCGGGTG AAAACCAGGC GCGCTGGTGC
GACAAGGACT TCGAGGCGCT GATGCGCAAG GCCCGCGAGG TGAGCGATCC GGCCGAGCGG
GCGAAACTGT ACGAGCAGGC CCAGGTGGTA TTCCACGAAC AGGCCCCATG GATACCGCTG
GCCTACCCGA AGCTGTTCAA CGTCCGGCGG AACACGGTGC AGGGCTACGT GATCAATCCG
TTGAGCAACA ACAACTTCGC CACCACCTCG GTGAAGCCCT AG
|
|---|
| Protein sequence | MLHPLLRHLP LALALALCAA GAAQAKNLVV CTEASPEGFD IVQYTGAVTA DASAETVFNR
LLAFRPGTTE VIPGLAERWD VSADGLSYTF HLRPGVKFHT TDYFKPTRSL NADDVLWTFQ
RALDPKHPWH ASALRGYAYF DAMGMGELIK SVEKVDELTV RFVLNRPEAP FLRDMAMPFA
SIYSAEYGDQ LLAAGKQGQL NNQPIGTGPF VFKRYAKDAQ VRYTANPDYY AGKPPIDNLV
FAITLDPNVR MQKVRAGECQ VSLYPKPEDV PRLKQDPNLA VDEIDALLTT YIAINTQHKP
LDDPRVRQAI NLALDKKAML DAVFGPGAAS PAVGPYPPTL LGYNHSIQDW PHDPERARAL
LKEAGAENLR ITLFIRNGTS PTIPNPALAA QMLQADLAKA GIQLTIRSLE WGELLKRSKA
GEHDLSLLGW AGDNGDPDNF LSPNLSCAAA ESGENQARWC DKDFEALMRK AREVSDPAER
AKLYEQAQVV FHEQAPWIPL AYPKLFNVRR NTVQGYVINP LSNNNFATTS VKP
|
|---|
| |