| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_58390 |
|---|
| Symbol | |
|---|
| ID | 4382621 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008463 |
|---|
| Strand | + |
|---|
| Start bp | 5200657 |
|---|
| End bp | 5202258 |
|---|
| Gene Length | 1602 bp |
|---|
| Protein Length | 533 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 639327292 |
|---|
| Product | putative binding protein component of ABC transpor |
|---|
| Protein accession | YP_792845 |
|---|
| Protein GI | 116052531 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 35 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 60 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTAAGA TCCTTCCCCT TCGGGCCTGG CTGGCAGCCG GTCTGATCCT CGGCTCCCCG
TTCTCCCACG CCGCCAGCAA CCTGGTGTTC TGCTCGGAGG GCAGCCCGGC CGGCTTCGAT
CCCGCCCAGT ACACCACCGG CACCGACTAC GACGCGACCT CGGTCACCCT GTTCAACCGC
CTCGTCCAGT TCGAGCGCGG CGGCACCCGG GCGATCCCGG CCCTGGCGGA AAGCTGGGAC
ATCGGCGACG ACGGCAAGAC CTACACCTTC CACCTGCGCA AGGGTGTGAA GTTCCACAGC
ACCGACTACT TCAAGCCGAC CCGCGAATTC AATGCCGACG ACGTGCTGTT CACCTTCGAA
CGCATGCTCG ACAAGAATCA TCCGTTCCGC AAGGCCTACC CCACCGAGTT TCCCTACTTC
ACCGACATGG GCCTGGACAA GAACATCGCC AGGGTCGAGA AGCTCGACGA GCACAGGGTG
AAGTTCACCC TCAACGAGGT CGACGCGGCC TTCATCCAGA ACCTGGCGAT GGACGTCGCC
TCGATCCAGT CCGCCGAGTA CGCAGGGCAG TTGCTCGAGG CCGGCAAGCC ACAGCAGATC
AACCAGAAGC CGATCGGCAC CGGGCCTTTC ATCCTGAGCC GCTACCAGAA GGATGCGCAG
ATCCGCTTCA AGGGCAACAA GGACTACTGG AAACCCGAAG ACGTGAAGAT CGACAACCTG
ATCTTCTCGA TCAACACCGA CGCCGCGGTG CGCGCGCAGA AGCTCAAGGC CGGCGAGTGC
CAGATCACCC TCAACCCACG CCCCGCCGAT CTCAAGGCCC TGCAGGAAGC GGCGAACCTG
AAGGTGCCCT CGCAGCCAGG CTTCAACCTC GGCTACATCG CCTACAACGT TACCCACAAG
CCGTTCGACC AGCTCGAAGT ACGCCAGGCG CTGGACATGG CGGTGAACAA GCAGGCCATC
ATCGACGCTG TCTACCAGGG TGCCGGGCAA CTGGCGGTGA ACGGCATGCC GCCGACCCAG
TGGTCCTATG ACGAAACCAT CAAGGACGCC CCGTTCGATC CGGCCAAGGC CCGGGAACTG
CTGAAGAAGG CCGGCGTCGC CGAGGGCACC GAGATCACCC TGTGGGCGAT GCCGGTGCAG
CGTCCCTACA ACCCCAACGC CAAGCTGATG GCGGAGATGA TCCAGGCCGA CTGGGCGAAG
ATCGGCATCA AGGCCAGGAT CGTCAGCTAC GAGTGGGGCG AGTACATCAA GCGCGCCCAT
GCCGGCGAGC ATGACGCCAT GCTGTTCGGC TGGACCGGCG ACAACGGCGA TCCGGACAAC
TGGCTGGCGA CCCTCTACGG CTGCGACTCG ATCAACGGCA ACAACGTATC GAAATGGTGC
GACGCGGCCT ACGACAAGCT GGTCAAGGCT GCCAAGCGGG TCTCCGACCA GGACAAGCGC
AGCGAGCTGT ACAAGCAGGC CCAGCACATC CTCAAGGAGC AGGTGCCGAT CACCCCGATC
GCCCACTCCA CCGTGTACCA GCCGATGAAC AAGTCGGTGC ATGACTTCAA GATCAGCCCC
TTCTCGCGGA ACGCCTTCTA TGGCGTAACC AACCAGCCCT GA
|
|---|
| Protein sequence | MRKILPLRAW LAAGLILGSP FSHAASNLVF CSEGSPAGFD PAQYTTGTDY DATSVTLFNR
LVQFERGGTR AIPALAESWD IGDDGKTYTF HLRKGVKFHS TDYFKPTREF NADDVLFTFE
RMLDKNHPFR KAYPTEFPYF TDMGLDKNIA RVEKLDEHRV KFTLNEVDAA FIQNLAMDVA
SIQSAEYAGQ LLEAGKPQQI NQKPIGTGPF ILSRYQKDAQ IRFKGNKDYW KPEDVKIDNL
IFSINTDAAV RAQKLKAGEC QITLNPRPAD LKALQEAANL KVPSQPGFNL GYIAYNVTHK
PFDQLEVRQA LDMAVNKQAI IDAVYQGAGQ LAVNGMPPTQ WSYDETIKDA PFDPAKAREL
LKKAGVAEGT EITLWAMPVQ RPYNPNAKLM AEMIQADWAK IGIKARIVSY EWGEYIKRAH
AGEHDAMLFG WTGDNGDPDN WLATLYGCDS INGNNVSKWC DAAYDKLVKA AKRVSDQDKR
SELYKQAQHI LKEQVPITPI AHSTVYQPMN KSVHDFKISP FSRNAFYGVT NQP
|
|---|
| |