Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_55920 |
Symbol | |
ID | 4382583 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 4991824 |
End bp | 4993074 |
Gene Length | 1251 bp |
Protein Length | 416 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 639327096 |
Product | putative type II secretion system protein |
Protein accession | YP_792649 |
Protein GI | 116052338 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG4964] Flp pilus assembly protein, secretin CpaC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.0275442 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 56 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATCGGA GCACCGGGAT AGGCGTGTCG CGCTGGCTGG GAGGGCTGCT GGGGGGGGCG TTGGCGCTGC CGGCACTGGC TTTGCCGCAG GGCTGCATCG AGTTGCTGGC GCAGGCGCCG CGGGTCGACG TCGTCCAGGG ACAACAGCGT GACCTGCGCC TGGCGGTGCC GATCGAGCGG CTGGCCATCG GCGATCCGAA GATCGCAGAC GTACAGTTGC TGGATCGTCG CGGCTTCCTG GTCACCGGCA AGGAACAGGG CTCCACCAGC CTGCTGATCT GGACCGGCTG CAGTCCCGAG CCGTTGCGCA GCCTGGTGGA GGTCGAGGGA CGCGGTAGCG TCGATACCCG CGGTGCTCCA GCGTTCACCG CCGGCGCCGC GGAGGAGCTA CCGAACCAGG TGCAGACCGA TATCCGCTTC GTCGAGGTCA GCCGCAGCAA GCTGAAGCAG GCCAGCACCT CGTTCGTCCG GCGCGGCGGC AACCTCTGGG TGCTCGGTGC GCCAGGCAGC CTCGGCGACA TCAAGGTCAA TGCCGACGGC AGCGGCCTGG GCGGCACCTT CGGCACCGGC AGCTCGGGAT TCAACCTGAT CTTCGGCGGC GGCAAGTGGT TGAGCTTCAT GAATGCCCTG GAGGGCAGCG GCTTCGCCTA TACCCTGGCG CGCCCGAGCC TGGTGGCGAT GAGCGGGCAG AGCGCGTCGT TCCTCGCCGG CGGCGAGTTT CCGATCCCGG TGCCGAACGG CACCAACGAC AACGTCACCA TCGAATACAA GGAGTTCGGC ATCCGCCTGA CCCTCACCCC GACGGTGATG AACAACCGCC GCATCGCTCT CAAGGTGGCG CCGGAGGTCA GCGAACTGGA CTACAGCGCC GGCATCCAGA GCGGCGGGGT GGCGGTGCCG GCACTGCGCG TCCGGCGCAC CGACACCAGC GTGATGCTGG CCGATGGCGA GAGTTTCGTG ATCAGCGGGC TGACCAGCAG CAACTCGGTG AGCAACGTCG ACAAGTTTCC CTGGCTGGGC GACATCCCGA TCCTCGGTGC GTTCTTCCGC TCGACCAAGC TGGACAAGGA CGACCGCGAG CTGCTGATGA TCGTCACCCC GCACCTGGTC CAGCCGCTGG CCGCCGACGC ACAGTTGCCG GACCTGCCCG GCGAGGGCTT GCGGCACTAC GATCCGGGGT TCTCGCGCCT GTACTTCCTC GAGCGCGGCG AGTACGACGG CCAGCAGAAC GACACCGGCC TGTCGGATTA G
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Protein sequence | MHRSTGIGVS RWLGGLLGGA LALPALALPQ GCIELLAQAP RVDVVQGQQR DLRLAVPIER LAIGDPKIAD VQLLDRRGFL VTGKEQGSTS LLIWTGCSPE PLRSLVEVEG RGSVDTRGAP AFTAGAAEEL PNQVQTDIRF VEVSRSKLKQ ASTSFVRRGG NLWVLGAPGS LGDIKVNADG SGLGGTFGTG SSGFNLIFGG GKWLSFMNAL EGSGFAYTLA RPSLVAMSGQ SASFLAGGEF PIPVPNGTND NVTIEYKEFG IRLTLTPTVM NNRRIALKVA PEVSELDYSA GIQSGGVAVP ALRVRRTDTS VMLADGESFV ISGLTSSNSV SNVDKFPWLG DIPILGAFFR STKLDKDDRE LLMIVTPHLV QPLAADAQLP DLPGEGLRHY DPGFSRLYFL ERGEYDGQQN DTGLSD
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