Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_51450 |
Symbol | cupC3 |
ID | 4380017 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 4572629 |
End bp | 4575148 |
Gene Length | 2520 bp |
Protein Length | 839 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 639326713 |
Product | usher CupC3 |
Protein accession | YP_792277 |
Protein GI | 116048922 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG3188] P pilus assembly protein, porin PapC |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.390609 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 24 |
Fosmid unclonability p-value | 0.000267992 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | GTGGCCATAT TTAGGAAAAG GTTCGACCTC AAGGTGTCCG TCTATTCCAG GTCTTCCTGT CTCGTGGCCT TGGGATTGGC TTTGCCTGCC GTAACTTCCG CGGTGGAATT CAACGCCGAG TTCCTGAACA ACGAGGGCGG GGCGCCCGTT GAACTGAAGT ATTTCGAGAA CGGCAACTCG GTGTCGCCCG GCACTTACAG CGTCGACATT CATTTGAACC AGATCATGAT CCGGCGCGAA GATGTCGTGT TCAGTGCCGA TCCCGACACC GGAAGCGTTC GCCCGATCAT TCGGATGGGC CTGCTCAAGG AGATTGGGGT CGATATCGCC CGGCTGACTC GGGACAAGCT CATTCCGGCC AACCTGGAAA ACAATACGCC CCTGAATGTC GCCGAACTCA TCCCCGGTGC ATCCGTAGAG TTCGACGTCA ACAGCCTTTC CCTGCTGGTC AGCATTCCAC AGCTGTATGT ACAGCGGCAC TCGCGTGGCT ATGTGGATCC CTCTCTTTGG GATGACGGCG TCACCGCGTT GTTTTCCAAC TACCAGGCCA ACTTCACGCG CAACACCAAT TTTGGCCAGA ACAGCGATTA CCGCTACCTG GGTCTGCGCA ACGGCTTCAA CCTGTTTGGC TGGCGCCTGC GCAACGACTC TTCCCTGAGC GGAGGTACCG GCATGCGCAA CAAGTTCAGT AGCAACCGTA CCTATGTGGA ACGTGACATT CGTGCCCTGA AGGGGACCTT GTCCCTCGGT GAGTTGTATA CCTCCGCTCA GGGGGATGCT TTCGAGAGCG TGCGTATGCG CGGCGTGCAA CTGCAATCCG ATATCGGCAT GCTGCCCGAC AACGAGATCA GCTATACCCC GGTGGTGCGC GGTATCGCTG AAACCAATGC GACGGTCGAG GTGAGTCAGA ATGGCTTCGT GATCTATTCC ACCAACGTAC CGCCCGGTGC GTTCGAGATC ACCGACATCT ATCCCAGCGG CTCCAATGGC GACCTGGAGG TCAAGATCAT CGAGGCGGAC GGACGCCAGC GGTCCTTCAA GCAGTCCTAT TCCTACCTGC CGGTCATGAC CCGCAAGGGG AACCTGCGCT ATGGCCTGGC CGCCGGTGAA TACCATAATG ACGGCCAGCC GTCGGTCAAC CTGCTCCAGG GATCGGCTGT GTATGGCTTG TCCGACAGGG TTACCGGCTT TGGCGGCCTG CTGGCTGCGG AGAAGTACAA TGCCACCAAC CTGGGCCTCG GCTTCAACAC GCCCCTGGGC GGTCTTTCTG CGGACGTGAC CCATAGCCAG TCCCGCACGC GACGGGGTGG GCGCAACCAG GGGCAGAGTC TGCGGCTTCT CTATTCCAAG ACCATCAACG CCACCGAAAC CAGCTTTACC GTGGTGGGCT ATCGCTATTC CACGGAAGGC TACCGTACTC TCAGCCAGCA TATCGACGAC ATGTCCGACG AGAGCTACCT CTATGGCTCA AGTTCCAGTC GGCAGAAGAG CCGCATAGAC CTGACGGTGA ACCAGACGCT GTTCCGACGC AGTTCGCTCT ATCTCACGGC GGGCGAAACC ACATATTGGA ATCGCCCCGG CAGCAGCCGT CGCGTGCAGT TCGGCTTCAG CAGCGGCATC AAGCGCGCGA GCTACAGCCT GGCGGTTTCC CGTACCCAGG AGACGGGGTC GTTCGGGCGC TCCGATACCC AGTTCACGGC CTCCGTCAGC ATCCCCTTGG GCGGTAGCGC ACGCTCCAGT CAGGTATATG CCAATGCCGT GAGTTCACAG CATGGTGATT CGAGTCTGAA CACCGGTATC TCCGGATACC TGGATGAAGC CAATGCGTTC AACTACAGCG CACAGGCCAA CTACAGCAAG GACGGCGGCA ACTCCGGCAG CGTCGGCCTG GGTTGGGACA CGTCCAAGGC CAAGTTGTCC GCCAATTACA GCCAGGGGCG CGACAACAAG CAGATCAACC TGGGAGCAAG CGGTTCGGTA GTGGTGCATC CGGGGGGAGT GACCTTCGGC CAGCCGGTGG GGGAAACGTT CGGCCTGGTG GAGGTTCCGG AGGTTGGCGG CGTCGGCCTC GACGGCTACT CTTCGGTTCG CACCGACGGC CGTGGCTATG CCGTGCTCCC CTACATGCAA CCCTATCGTT ACAACTGGGT GAACCTGGAT ACCAATACCC TTGGAAGCGA TACCGAGATC AGCGACAGCA CGCAAATGGC CGTGCCGACC CGGGGCGCCG TGGTTGCCAA GCGTTTCTCC GCGGAGTCCG GTCGGCGGGT GCAGTTCGTC CTGAGCATGG AGTCTGGAGG AAAGATTCCC TTCGGTGCAC AGGCATACGA CAAGGAAGAG CGGGTCGTGG GAATGGTCGA CAACCTGTCC CGTTTGCTGG TGTTCGGTAT CGAGGACCAG GGGCGCCTGT CCATTCGCTG GAGCGATGGC TCCTGTTCAG TCGACTATCA GTTGCCGCCC AGGAACAAGG ACCTGACGTA CGAACGAGTT GCGCTCAGTT GCCGTCGGTC CTCGATCTGA
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Protein sequence | MAIFRKRFDL KVSVYSRSSC LVALGLALPA VTSAVEFNAE FLNNEGGAPV ELKYFENGNS VSPGTYSVDI HLNQIMIRRE DVVFSADPDT GSVRPIIRMG LLKEIGVDIA RLTRDKLIPA NLENNTPLNV AELIPGASVE FDVNSLSLLV SIPQLYVQRH SRGYVDPSLW DDGVTALFSN YQANFTRNTN FGQNSDYRYL GLRNGFNLFG WRLRNDSSLS GGTGMRNKFS SNRTYVERDI RALKGTLSLG ELYTSAQGDA FESVRMRGVQ LQSDIGMLPD NEISYTPVVR GIAETNATVE VSQNGFVIYS TNVPPGAFEI TDIYPSGSNG DLEVKIIEAD GRQRSFKQSY SYLPVMTRKG NLRYGLAAGE YHNDGQPSVN LLQGSAVYGL SDRVTGFGGL LAAEKYNATN LGLGFNTPLG GLSADVTHSQ SRTRRGGRNQ GQSLRLLYSK TINATETSFT VVGYRYSTEG YRTLSQHIDD MSDESYLYGS SSSRQKSRID LTVNQTLFRR SSLYLTAGET TYWNRPGSSR RVQFGFSSGI KRASYSLAVS RTQETGSFGR SDTQFTASVS IPLGGSARSS QVYANAVSSQ HGDSSLNTGI SGYLDEANAF NYSAQANYSK DGGNSGSVGL GWDTSKAKLS ANYSQGRDNK QINLGASGSV VVHPGGVTFG QPVGETFGLV EVPEVGGVGL DGYSSVRTDG RGYAVLPYMQ PYRYNWVNLD TNTLGSDTEI SDSTQMAVPT RGAVVAKRFS AESGRRVQFV LSMESGGKIP FGAQAYDKEE RVVGMVDNLS RLLVFGIEDQ GRLSIRWSDG SCSVDYQLPP RNKDLTYERV ALSCRRSSI
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