Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_51270 |
Symbol | dapA |
ID | 4379994 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 4555802 |
End bp | 4556680 |
Gene Length | 879 bp |
Protein Length | 292 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 639326697 |
Product | dihydrodipicolinate synthase |
Protein accession | YP_792261 |
Protein GI | 116048938 |
COG category | [E] Amino acid transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0329] Dihydrodipicolinate synthase/N-acetylneuraminate lyase |
TIGRFAM ID | [TIGR00674] dihydrodipicolinate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 66 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 25 |
Fosmid unclonability p-value | 0.000235612 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGATTGCGG GCAGTATGGT GGCACTGGTC ACCCCCTTCG ATGCTCAGGG TCGACTGGAC TGGGACAGCC TCGCCAAGCT GGTGGACTTC CACTTGCAGG AAGGCACCAA CGCCATCGTC GCCGTCGGCA CCACCGGTGA ATCGGCCACG CTGGACGTGG AAGAGCACAT CCAGGTGATC CGTCGCGTGG TCGACCAGGT CAAGGGCCGC ATCCCGGTGA TCGCCGGCAC CGGCGCCAAC TCCACCCGCG AGGCGGTGGC GCTGACCGAG GCCGCGAAAA GCGGCGGCGC CGACGCCTGC CTGCTGGTGA CGCCGTACTA CAACAAGCCG ACCCAGGAAG GCATGTACCA GCACTTCCGC CATATCGCCG AAGCCGTTGC GATCCCGCAG ATCCTCTACA ACGTGCCCGG GCGTACCTCC TGTGACATGC TTCCGGAGAC CGTCGAGCGC CTGTCCAAGG TGCCGAACAT CATCGGCATC AAGGAGGCCA CCGGCGACCT GCAACGCGCC AAGGAAGTCA TCGAGCGCGT CGGCAAGGAC TTCCTCGTCT ATTCCGGCGA CGACGCCACT GCCGTCGAGC TGATGCTGCT GGGTGGCAAG GGCAACATCT CGGTGACCGC CAACGTCGCG CCGCGCGCCA TGAGCGACCT GTGCGCCGCC GCCATGCGCG GCGACGCCGC TGCCGCGCGC GCCATCAACG ACCGCCTGAT GCCGCTGCAC AAGGCGTTGT TCATCGAATC CAACCCCATT CCGGTGAAGT GGGCCCTGCA TGAGATGGGT CTGATCCCCG AGGGCATCCG CCTGCCCCTG ACCTGGCTCA GCCCGCGTTG CCACGAGCCG CTGCGTCAGG CCATGCGCCA GACCGGCGTA TTGGCTTGA
|
Protein sequence | MIAGSMVALV TPFDAQGRLD WDSLAKLVDF HLQEGTNAIV AVGTTGESAT LDVEEHIQVI RRVVDQVKGR IPVIAGTGAN STREAVALTE AAKSGGADAC LLVTPYYNKP TQEGMYQHFR HIAEAVAIPQ ILYNVPGRTS CDMLPETVER LSKVPNIIGI KEATGDLQRA KEVIERVGKD FLVYSGDDAT AVELMLLGGK GNISVTANVA PRAMSDLCAA AMRGDAAAAR AINDRLMPLH KALFIESNPI PVKWALHEMG LIPEGIRLPL TWLSPRCHEP LRQAMRQTGV LA
|
| |