Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | PA14_50140 |
Symbol | fliF |
ID | 4380066 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
Kingdom | Bacteria |
Replicon accession | NC_008463 |
Strand | - |
Start bp | 4455730 |
End bp | 4457526 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 639326603 |
Product | flagellar MS-ring protein |
Protein accession | YP_792168 |
Protein GI | 116049030 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 27 |
Fosmid unclonability p-value | 0.000736226 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
| |
Sequence |
Gene sequence | ATGGCCGATG CACTGATCGA CAGCCAGGTT CCCGCCAAGA GCGGCGGTGC CGGGATGCTG AAGAAATCCT TCCCGGGACT GTCGTTCCTC GACAACCTTT CCGAGATGAC CATGCTGCGC CAGATCGGCC TGCTGGTCGG TCTCGCCGCC AGCGTGGCGA TCGGCTTCGC CGTCGTGCTC TGGTCCCAGC AGCCGGACTA CAAGCCGCTC TATGGCAGCC TCAACGGGGT CGACGCGAAC CGTGTGGTGG AAGCGCTGAC CGCGGCGGAC ATTCCCTACA AGGTCGAACC CAACTCCGGC GCGCTGCTGG TCAAGGCCGA CGACCTCGGC CGGGCACGCA TGAAGGTGGC CTCCGCCGGC GTGGCGCCGA CCGACAACAA CGTCGGTTTC GAGATCCTCG ACAAGGAACA GGCGCTGGGC ACCAGCCAGT TCATGGAAGC CACCAACTAT CGCCGCGGCC TGGAAGGCGA GCTGGCGCGC ACCGTGTCGA GCCTGAACAA CGTCAAGGCC GCCCGCGTGC ACCTGGCGAT CCCGAAGAGT TCGGTGTTCG TCCGCGACGA CCGCAAGCCC AGCGCCTCGG TGCTGGTCGA GCTGTATCCG GGGCGCAGCC TGGAGCCGAG CCAGGTGATG GCGATCGTCA ACCTGGTCGC CACCAGTGTG CCGGAGCTGG ACAAGTCGCA GGTCACCGTG GTCGACCAGA AGGGCAACCT GCTCTCCGAC CAGCAGGAGC TCTCCGAGCT GACCATGGCC GGCAAGCAGT TCGACTTCAC CCGGCGCATG GAAGGCCTGC TCACCCAGCG CGTGCACAAT ATCCTGCAAC CTGTGCTGGG CAACGGTCGC TACAAGGCCG AGGTGTCCGC CGACGTCGAC TTCAGCGCGG TCGAGTCGAC CTCGGAGATG TACAACCCGG ACCAGCCGGC CCTGCGCAGC GAGCAACGCA ACAACGAGGA ACGGCAGAAT TCGTCCGGCC CGCAGGGCGT GCCGGGGGCG CTGTCGAACC AGCCGCCGGG CCCGGCCAGC GCGCCGCAGC AGGCCACCGC CAGCGCGCCG GCCGACTACG TCGCGCCGGG CCAGCCGCTG AAGGACGCCA ACGGCCAGAC CATCATCGAT CCGAAGACCG GCAAGCCGGA GCTGGCGCCG TACCCGACCG ACAAGCGCGA CCAGACTACC CGCAACTATG AACTGGACCG CTCGATCAGC TACACCAAGC AGCAGCAGGG GCGCTTGCGC CGACTGTCGG TGGCGGTGGT GCTGGACGAC CAGATGAAGG TCGACGCGAA GACCGGCGAG GTCAGCCACC AGCCCTGGAG CGCCGACGAA CTGGCGCGCT TCACCCGCCT GGTACAGGAT TCGGTGGGCT ACGACGCCAG CCGCGGCGAC AGCGTCAGCG TGATCAACGC GCCGTTCGCC CCGGCCCAGG CCGAAGAGAT CGACAGCATT CCGTTCTACT CGCAGCCGTG GTTCTGGGAC ATCGTCAAGC AGGTGCTCGG CGTGCTGTTC ATCCTGGTCC TGGTGTTCGG CGTGCTGCGT CCGGTGCTGA GCAACATCAC CGGCGGCGGC AAGGGCAAGT CGCTGGCCGG CGGCGGCGGT CGCGACGGCG ACCTGGCGCT GGGCGAGAGT GGCCTGGAAG GCTCGCTGGC CGACGATCGG GTGAGCATCG GCGGGCCGTC GAGCATCCTC CTGCCGAGCC CCACGGAGGG GTATGATGCG CAATTGAACG CGATCAAGAA CCTGGTCGCA CAGGACCCGG GCCGCGTCGC CCAGGTCGTG AAAGAGTGGA TCAACGCCGA TGAGTAA
|
Protein sequence | MADALIDSQV PAKSGGAGML KKSFPGLSFL DNLSEMTMLR QIGLLVGLAA SVAIGFAVVL WSQQPDYKPL YGSLNGVDAN RVVEALTAAD IPYKVEPNSG ALLVKADDLG RARMKVASAG VAPTDNNVGF EILDKEQALG TSQFMEATNY RRGLEGELAR TVSSLNNVKA ARVHLAIPKS SVFVRDDRKP SASVLVELYP GRSLEPSQVM AIVNLVATSV PELDKSQVTV VDQKGNLLSD QQELSELTMA GKQFDFTRRM EGLLTQRVHN ILQPVLGNGR YKAEVSADVD FSAVESTSEM YNPDQPALRS EQRNNEERQN SSGPQGVPGA LSNQPPGPAS APQQATASAP ADYVAPGQPL KDANGQTIID PKTGKPELAP YPTDKRDQTT RNYELDRSIS YTKQQQGRLR RLSVAVVLDD QMKVDAKTGE VSHQPWSADE LARFTRLVQD SVGYDASRGD SVSVINAPFA PAQAEEIDSI PFYSQPWFWD IVKQVLGVLF ILVLVFGVLR PVLSNITGGG KGKSLAGGGG RDGDLALGES GLEGSLADDR VSIGGPSSIL LPSPTEGYDA QLNAIKNLVA QDPGRVAQVV KEWINADE
|
| |