| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PA14_46810 |
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| Symbol | |
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| ID | 4383064 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Pseudomonas aeruginosa UCBPP-PA14 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008463 |
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| Strand | - |
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| Start bp | 4168546 |
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| End bp | 4169769 |
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| Gene Length | 1224 bp |
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| Protein Length | 407 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 639326329 |
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| Product | RNA polymerase ECF-subfamily sigma-70 factor |
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| Protein accession | YP_791894 |
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| Protein GI | 116049303 |
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| COG category | [K] Transcription |
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| COG ID | [COG4941] Predicted RNA polymerase sigma factor containing a TPR repeat domain |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.325328 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.000000102241 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | decreased coverage |
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Sequence |
| Gene sequence | TTGCGCAGCC GCATCGAGGC GCTGTACCGC GAGGAGTCGC GGCGCGTGCT GGCGACCCTG
ATCCGCCTGC TCGGCGATTT CGAGCTGGCC GAGGAAGCCT TGCACGACGC CTTCATCGCC
GCCGTCGAGC AGTGGCCGCG CGACGGTATC CCGCGTAACC CGCGCGCCTG GCTGGTTTCC
GCCGGGCGCT TCAAGGCCAT CGACAACCTG CGCCGGCGAG CGCGCTTCGA CGCCTCGCAG
CGGCTGCTCG CCGAGCAACT GGAAGAGCAG GCCGAGGCGC CGGCGGAGGA GGGCGATGCG
GTGGAAGACG ACCGGCTACG CCTGATCTTC ACCTGCTGCC ACCCGGCGCT GACCCCCGAG
GCACAGGTGG CGCTGACCCT GCGCGAGGTC TGCGACCTGC GCACCGAGGA GATCGCCCGC
GCCTTCCTCG CCGCGCCCAG CGCCATCGCC CAACGCATCG TGCGGGCCAA GAACAAGATC
CGCGAGGCCC GGATTCCCTA CCAGGTACCG ACCCTGGAGG AACTCCCCGA GCGGCTGGGC
AACGTCCTGC AAGTGATCTA CCTGGTGTTC AACGAGGGCT ACTCGGCCTC CACCGGCACC
AGCCTGACCC GCGCCGATCT CAGCGGCGAG GCGATCCGCG TCGGCCGCCT GCTGGTCGAA
CTGCTGCCCG ACCCCGAGGC CCTCGGCCTG CTCGCCCTGA TGTTGCTGCA CGACTCGCGG
CGCCAGGCGC GGACCTCGGC CAGCGGCGAA CTGGTGCGGC TCGACGAGCA GGACCGCGCG
CTGTGGGATC GTGGACTGAT CGTCGAGGGG CTCGGCCTGG TCGAGCGGGC CCTGGCCAGC
CGCCGTTTCG GGGCCTACAC CCTGCAGGCG GCCATCGTCG CGGTGCACGC CCAGGCGCCG
CGCGCCGAGG ACACCGACTG GGCACGGATC GTCGCCCTCT ACGACGCGCT ACTGCGCCTG
GCGCCATCGC CGGTGATCGA ACTCAACCGC GCCGTGGCCT TGGCCATGTG CGATGGCGTC
GAGGTCGGGC TGGCCGCGGT CGATGCGTTG CTGGCGCGGG GTGAACTGGC CGATTACCAC
CTGGTGCACT CGGCGCGCGC CGACTTCTGC CGCCGTCTCG GTCGCCGCCG CGAGGCCCGC
GAGGCCTACC GCGCGGCGCT GGCCCTGGCG CGCCAGGAGC CGGAGCGGCG CTTCATCGAG
CAGCGCCTGC GCGAACTCGA TTGA
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| Protein sequence | MRSRIEALYR EESRRVLATL IRLLGDFELA EEALHDAFIA AVEQWPRDGI PRNPRAWLVS
AGRFKAIDNL RRRARFDASQ RLLAEQLEEQ AEAPAEEGDA VEDDRLRLIF TCCHPALTPE
AQVALTLREV CDLRTEEIAR AFLAAPSAIA QRIVRAKNKI REARIPYQVP TLEELPERLG
NVLQVIYLVF NEGYSASTGT SLTRADLSGE AIRVGRLLVE LLPDPEALGL LALMLLHDSR
RQARTSASGE LVRLDEQDRA LWDRGLIVEG LGLVERALAS RRFGAYTLQA AIVAVHAQAP
RAEDTDWARI VALYDALLRL APSPVIELNR AVALAMCDGV EVGLAAVDAL LARGELADYH
LVHSARADFC RRLGRRREAR EAYRAALALA RQEPERRFIE QRLRELD
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